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NCBI: 02-MAR-2017

⊟Summary[edit source | edit]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS04165 [old locus tag: SA0732 ]
  • pan locus tag?: SAUPAN002711000
  • symbol: SA_RS04165
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit source | edit]

⊟Gene[edit source | edit]

⊟General[edit source | edit]

  • type: CDS
  • locus tag: SA_RS04165 [old locus tag: SA0732 ]
  • symbol: SA_RS04165
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 839200..839658
  • length: 459
  • essential: unknown

⊟Accession numbers[edit source | edit]

  • Location: NC_002745 (839200..839658) NCBI
  • MicrobesOnline:

⊟Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGGCTGATAGAACGAATAAAGAAATTAAAACAGGACGCTTTATTGCAACTGCATCAATC
    GTATTCTCAATATTATTGATTATTCATTACTTTGTTTCGTTGGATAATGCGACTGCCAAA
    GCATTACTTAATTTAACGAATCAAAACACTTCAGATAAAGCGATTGATTACATTTTAAAC
    AGCTTTAGATTCACTGGTATTATGTATATTTTGGCTTATCTAGCAGGCTTCATCACTTTT
    TGGAATCGACATACTTATGTGTGGTGGTTTATGTTTGCAGTTTATGTATCAAATAGTTTG
    TTTACGTTGATTAATTTATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTAC
    TTAACATTGCCAATTTTAATCGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTT
    GTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAG
    60
    120
    180
    240
    300
    360
    420
    459

⊟Protein[edit source | edit]

⊟General[edit source | edit]

  • locus tag: SA_RS04165 [old locus tag: SA0732 ]
  • symbol: SA_RS04165
  • description: hypothetical protein
  • length: 152
  • theoretical pI: 10.3529
  • theoretical MW: 17242.3
  • GRAVY: 0.698026

⊟Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:
  • PFAM:
    Tetraspannin (CL0347) DUF4064; Protein of unknown function (DUF4064) (PF13273; HMM-score: 15.3)
    no clan definedDUF2721; Protein of unknown function (DUF2721) (PF11026; HMM-score: 10.7)
    DUF373; Domain of unknown function (DUF373) (PF04123; HMM-score: 8.4)

⊟Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

⊟Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • LocateP:
  • SignalP: no predicted signal peptide
    • Ymax: 0.267
    • Ymax_pos: 40
    • Cmax: 0.199
    • Cmax_pos: 40
    • Smax: 0.565
    • Smax_pos: 37
    • Smean: 0.254
    • D: 0.262
  • predicted transmembrane helices (TMHMM): 4

⊟Accession numbers[edit source | edit]

  • GI: 446707906 NCBI
  • RefSeq: WP_000785252 NCBI
  • UniProt:

⊟Protein sequence[edit source | edit]

  • MADRTNKEIKTGRFIATASIVFSILLIIHYFVSLDNATAKALLNLTNQNTSDKAIDYILNSFRFTGIMYILAYLAGFITFWNRHTYVWWFMFAVYVSNSLFTLINLSITIQAIKAAHGAYLTLPILIVIIGSVALAIYMLVVSIKRKSTFNR

⊟Experimental data[edit source | edit]

  • experimentally validated: no data available

⊟Expression & Regulation[edit source | edit]

⊟Operon[edit source | edit]

  • SA_RS04165 no polycistronic organisation predicted

⊟Regulation[edit source | edit]

  • sigma factor:
  • regulator:

⊟Transcription pattern[edit source | edit]

⊟Protein synthesis (provided by Aureolib)[edit source | edit]

⊟Protein stability[edit source | edit]

  • half-life: no data available

⊟Biological Material[edit source | edit]

⊟Mutants[edit source | edit]

⊟Expression vector[edit source | edit]

⊟lacZ fusion[edit source | edit]

⊟GFP fusion[edit source | edit]

⊟two-hybrid system[edit source | edit]

⊟FLAG-tag construct[edit source | edit]

⊟Antibody[edit source | edit]

⊟Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

⊟Literature[edit source | edit]

⊟References[edit source | edit]

⊟Relevant publications[edit source | edit]

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