NCBI: 02-MAR-2017
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus N315
- locus tag: SA_RS04165 [old locus tag: SA0732 ]
- pan locus tag?: SAUPAN002711000
- symbol: SA_RS04165
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SA_RS04165 [old locus tag: SA0732 ]
- symbol: SA_RS04165
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 839200..839658
- length: 459
- essential: unknown
⊟Accession numbers[edit source | edit]
- Location: NC_002745 (839200..839658) NCBI
- MicrobesOnline:
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
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421ATGGCTGATAGAACGAATAAAGAAATTAAAACAGGACGCTTTATTGCAACTGCATCAATC
GTATTCTCAATATTATTGATTATTCATTACTTTGTTTCGTTGGATAATGCGACTGCCAAA
GCATTACTTAATTTAACGAATCAAAACACTTCAGATAAAGCGATTGATTACATTTTAAAC
AGCTTTAGATTCACTGGTATTATGTATATTTTGGCTTATCTAGCAGGCTTCATCACTTTT
TGGAATCGACATACTTATGTGTGGTGGTTTATGTTTGCAGTTTATGTATCAAATAGTTTG
TTTACGTTGATTAATTTATCAATCACAATTCAAGCAATAAAAGCTGCACACGGTGCGTAC
TTAACATTGCCAATTTTAATCGTTATTATAGGTTCGGTTGCATTAGCGATTTATATGCTT
GTTGTTTCTATCAAACGTAAAAGTACATTTAATCGCTAG60
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⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SA_RS04165 [old locus tag: SA0732 ]
- symbol: SA_RS04165
- description: hypothetical protein
- length: 152
- theoretical pI: 10.3529
- theoretical MW: 17242.3
- GRAVY: 0.698026
⊟Function[edit source | edit]
- reaction:
- TIGRFAM:
- TheSEED:
- PFAM: Tetraspannin (CL0347) DUF4064; Protein of unknown function (DUF4064) (PF13273; HMM-score: 15.3)no clan definedDUF2721; Protein of unknown function (DUF2721) (PF11026; HMM-score: 10.7)DUF373; Domain of unknown function (DUF373) (PF04123; HMM-score: 8.4)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 4
- LocateP:
- SignalP: no predicted signal peptide
- Ymax: 0.267
- Ymax_pos: 40
- Cmax: 0.199
- Cmax_pos: 40
- Smax: 0.565
- Smax_pos: 37
- Smean: 0.254
- D: 0.262
- predicted transmembrane helices (TMHMM): 4
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MADRTNKEIKTGRFIATASIVFSILLIIHYFVSLDNATAKALLNLTNQNTSDKAIDYILNSFRFTGIMYILAYLAGFITFWNRHTYVWWFMFAVYVSNSLFTLINLSITIQAIKAAHGAYLTLPILIVIIGSVALAIYMLVVSIKRKSTFNR
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- SA_RS04165 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]