NCBI: 02-MAR-2017

⊟Summary

• organism: Staphylococcus aureus N315
• locus tag: SA_RS06890 [old locus tag: SA1213 ]
• pan locus tag^?: SAUPAN003786000
• symbol: SA_RS06890
• pan gene symbol^?: opp-2C
• synonym:
• product: peptide ABC transporter permease

⊟Gene

⊟General

• type: CDS
• locus tag: SA_RS06890 [old locus tag: SA1213 ]
• symbol: SA_RS06890
• product: peptide ABC transporter permease
• replicon: chromosome
• strand: -
• coordinates: 1385875..1386705
• length: 831
• essential: unknown

⊟Accession numbers

• Location: NC_002745 (1385875..1386705) NCBI
• BioCyc: G1G21-1392 BioCyc
• MicrobesOnline:

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
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  ATGCATAAAATATTTTCAAAGAATAACCTGATATTTTTTGTATTCGTTGCATTTATTTTT
  GTGGTAATTGTACTGCAATTCTTTGTCAGTAGTGAAAATGCAACCAAAGTCAATTTATCA
  CAAACTTTTGAACCTATTAGTTGGTTGCATTTATTAGGAACTGATGATTATGGGAGAGAT
  TTATTTACCCGAATTATTATCGGTGCACGTTCAACATTGTTTGTTACTGTTTTAACATTA
  ATAGCTATCGTTGTCATAGGTGTTACACTAGGTCTATTTGCCGGATATAAAAAAGGGTGG
  ATTGAACGATTAGTGTTAAGGTTTATTGATGTTGGTCTAAGTATTCCAGAATTTATCATC
  ATGATTGCTTTAGCAAGCTTTTTTCAACCATCTTTGTGGAATTTAGTTATCTCAATTACA
  GTAATAAAATGGATGAATTACACAAGGTTGACTAGAAGTATAGTTAATAGCGAAATGAAT
  AAGCCTTATATAAAAATGGCACAATTATTTCATGTACCTACAAGAACAATATTAATACGT
  CATTTAACACCTAAAATTATACCGGCTATTATCGTTTTGATGGTCGTTGATTTCGGTAAA
  ATCATTTTATATATAAGTTCACTATCATTTATTGGGTTAGGTGCACAACCGCCAACACCA
  GAGTGGGGCGCTATGTTGCAACAAGGTCGTGATTTTATTTCGTCTCATCCAATTATGTTG
  ATTGCACCTGCTTCAGTCATTGCTATAACTATTTTAATTTTTAATTTAACCGGAGATGCG
  CTAAGAGATAGATTGCTAAAACAACGAGGTGAATATGATGAGTCTCATTGA
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  831
  

⊟Protein

⊟General

• locus tag: SA_RS06890 [old locus tag: SA1213 ]
• symbol: SA_RS06890
• description: peptide ABC transporter permease
• length: 276
• theoretical pI: 10.2524
• theoretical MW: 31241.1
• GRAVY: 0.688768

⊟Function

• TIGRFAM:
  MetabolismTransport and binding proteinsCations and iron carrying compoundsnickel ABC transporter, permease subunit NikC (TIGR02790; EC 3.6.3.24; HMM-score: 246.9)
  and 2 more
  MetabolismTransport and binding proteinsCations and iron carrying compoundsnickel ABC transporter, permease subunit NikB (TIGR02789; EC 3.6.3.24; HMM-score: 21.8)
  MetabolismTransport and binding proteinsAmino acids, peptides and aminesamino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family (TIGR01726; HMM-score: 19.4)
• TheSEED:
• PFAM:
  BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 94.5)
  and 1 more
  no clan definedDHHC; DHHC palmitoyltransferase (PF01529; HMM-score: 6.8)

⊟Structure, modifications & interactions

• domains:
• modifications:
• cofactors:
• effectors:
• protein partners:

⊟Localization

• PSORTb: Cytoplasmic Membrane
  • Cytoplasmic Score: 0
  • Cytoplasmic Membrane Score: 10
  • Cellwall Score: 0
  • Extracellular Score: 0
  • Internal Helices: 4
• LocateP:
• SignalP: no predicted signal peptide
  • Ymax: 0.295
  • Ymax_pos: 34
  • Cmax: 0.204
  • Cmax_pos: 40
  • Smax: 0.646
  • Smax_pos: 28
  • Smean: 0.409
  • D: 0.34
• predicted transmembrane helices (TMHMM): 5

⊟Accession numbers

• GI: 446471082 NCBI
• RefSeq: WP_000548936 NCBI
• UniProt:

⊟Protein sequence

• MHKIFSKNNLIFFVFVAFIFVVIVLQFFVSSENATKVNLSQTFEPISWLHLLGTDDYGRDLFTRIIIGARSTLFVTVLTLIAIVVIGVTLGLFAGYKKGWIERLVLRFIDVGLSIPEFIIMIALASFFQPSLWNLVISITVIKWMNYTRLTRSIVNSEMNKPYIKMAQLFHVPTRTILIRHLTPKIIPAIIVLMVVDFGKIILYISSLSFIGLGAQPPTPEWGAMLQQGRDFISSHPIMLIAPASVIAITILIFNLTGDALRDRLLKQRGEYDESH

⊟Experimental data

• experimentally validated: no data available

⊟Expression & Regulation

⊟Operon

• SA_RS06890 no polycistronic organisation predicted

⊟Regulation

• sigma factor:
• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Other Information

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