NCBI: 02-MAR-2017
Contents
⊟Summary[edit source | edit]
- organism: Staphylococcus aureus N315
- locus tag: SA_RS08045 [old locus tag: SA1426 ]
- pan locus tag?: SAUPAN004184000
- symbol: SA_RS08045
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit source | edit]
⊟Gene[edit source | edit]
⊟General[edit source | edit]
- type: CDS
- locus tag: SA_RS08045 [old locus tag: SA1426 ]
- symbol: SA_RS08045
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1630256..1630783
- length: 528
- essential: unknown
⊟Accession numbers[edit source | edit]
- Location: NC_002745 (1630256..1630783) NCBI
- MicrobesOnline:
⊟Phenotype[edit source | edit]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit source | edit]
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481ATGGGTTTAGTTCGCAAGTTTTTTATGCCGAATTCATATGTTCAATCAATATTTCAAATT
GATTTAGACAAGTTAGTGGACAAAGGCGTTAAAGGTATTATTACAGATTTAGATAATACG
CTAGTAGGTTGGGATGTTAAAGAACCTACAGAACGTGTTAAAGCATGGTTTAAGGAAGCT
AATGAAAAAGGAATCACTATTACAATCGTGTCTAATAATAATGAGTCTCGTGTTGCTAGT
TTTAGTCAGCATTTAGACATCGATTTTATTTTTAAAGCGAGAAAGCCAATGGGGAAAGCG
TTTGATAAAGCAATAACTAAGATGAATATCAGACCAGATCAAACTGTTGTTATAGGTGAC
CAAATGCTTACTGATGTATTTGGTGGTAATCGTCGAGGTCTATATACAATTATGGTTGTT
CCAGTTAAACGAACTGATGGCTTTATTACTAAGGTTAATAGATTAATTGAAAGACGATTA
TTACGTCATTTCAGTAAAAAAGGTTATATCACATGGGAGGAAAATTGA60
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528
⊟Protein[edit source | edit]
⊟General[edit source | edit]
- locus tag: SA_RS08045 [old locus tag: SA1426 ]
- symbol: SA_RS08045
- description: hypothetical protein
- length: 175
- theoretical pI: 10.4084
- theoretical MW: 20171.3
- GRAVY: -0.297714
⊟Function[edit source | edit]
- reaction:
- TIGRFAM: HAD phosphatase, family IIIA (TIGR01668; EC 3.1.3.-; HMM-score: 165.6)Unknown functionEnzymes of unknown specificityHAD hydrolase, family IIIA (TIGR01662; HMM-score: 81.4)HAD hydrolase, TIGR02253 family (TIGR02253; HMM-score: 40.6)Unknown functionEnzymes of unknown specificityHAD hydrolase, family IIA (TIGR01460; HMM-score: 34.5)Unknown functionEnzymes of unknown specificityCof-like hydrolase (TIGR00099; HMM-score: 34.2)noncanonical pyrimidine nucleotidase, YjjG family (TIGR02254; EC 3.1.3.5; HMM-score: 31.3)phosphoglycolate/pyridoxal phosphate phosphatase family (TIGR01452; EC 3.1.3.18; HMM-score: 29.8)HAD hydrolase, REG-2-like, family IA (TIGR02252; HMM-score: 28.9)Unknown functionEnzymes of unknown specificityHAD hydrolase, family IA, variant 1 (TIGR01549; HMM-score: 26.2)Unknown functionEnzymes of unknown specificityHAD hydrolase, TIGR01457 family (TIGR01457; HMM-score: 23.7)Unknown functionEnzymes of unknown specificityHAD hydrolase, family IA, variant 3 (TIGR01509; HMM-score: 23.4)histidinol-phosphate phosphatase domain (TIGR01656; HMM-score: 22.9)Unknown functionEnzymes of unknown specificityHAD hydrolase, family IIB (TIGR01484; HMM-score: 22.2)HAD hydrolase, TIGR01459 family (TIGR01459; HMM-score: 22)Cell envelopeBiosynthesis and degradation of surface polysaccharides and lipopolysaccharides3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family (TIGR01670; EC 3.1.3.45; HMM-score: 21.4)Unknown functionEnzymes of unknown specificityHAD phosphoserine phosphatase-like hydrolase, family IB (TIGR01488; HMM-score: 21.3)Unknown functionEnzymes of unknown specificityHAD hydrolase, TIGR01458 family (TIGR01458; HMM-score: 21.1)HAD phosphatase, family IIIC (TIGR01681; HMM-score: 18.9)mannosyl-3-phosphoglycerate phosphatase family (TIGR01486; EC 3.1.3.-; HMM-score: 18.3)FkbH domain (TIGR01686; HMM-score: 16)HAD hydrolase, family IA, variant 2 (TIGR01493; HMM-score: 15.9)sucrose-phosphate phosphatase subfamily (TIGR01482; EC 3.1.3.-; HMM-score: 15.1)mannosyl-3-phosphoglycerate phosphatase (TIGR02461; EC 3.1.3.70; HMM-score: 14.8)beta-phosphoglucomutase family hydrolase (TIGR02009; HMM-score: 14.5)haloacid dehalogenase, type II (TIGR01428; EC 3.8.1.2; HMM-score: 13.8)pyrimidine 5'-nucleotidase (TIGR01993; EC 3.1.3.5; HMM-score: 13.6)Energy metabolismBiosynthesis and degradation of polysaccharidesbeta-phosphoglucomutase (TIGR01990; EC 5.4.2.6; HMM-score: 12.1)sucrose phosphatase (TIGR01485; EC 3.1.3.24; HMM-score: 11.6)
- TheSEED:
- PFAM: HAD (CL0137) HAD_2; haloacid dehalogenase-like hydrolase (PF13419; HMM-score: 38.7)Hydrolase_like; HAD-hyrolase-like (PF13242; HMM-score: 35.2)Hydrolase_3; haloacid dehalogenase-like hydrolase (PF08282; HMM-score: 34)PGP_phosphatase; Mitochondrial PGP phosphatase (PF09419; HMM-score: 32.9)Hydrolase; haloacid dehalogenase-like hydrolase (PF00702; HMM-score: 26.1)Hydrolase_6; haloacid dehalogenase-like hydrolase (PF13344; HMM-score: 16.7)Glyco_hydro_tim (CL0058) Cellulase; Cellulase (glycosyl hydrolase family 5) (PF00150; HMM-score: 13.5)HAD (CL0137) S6PP; Sucrose-6F-phosphate phosphohydrolase (PF05116; HMM-score: 13.3)
⊟Structure, modifications & interactions[edit source | edit]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit source | edit]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- Ymax: 0.127
- Ymax_pos: 17
- Cmax: 0.144
- Cmax_pos: 56
- Smax: 0.203
- Smax_pos: 16
- Smean: 0.145
- D: 0.134
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit source | edit]
⊟Protein sequence[edit source | edit]
- MGLVRKFFMPNSYVQSIFQIDLDKLVDKGVKGIITDLDNTLVGWDVKEPTERVKAWFKEANEKGITITIVSNNNESRVASFSQHLDIDFIFKARKPMGKAFDKAITKMNIRPDQTVVIGDQMLTDVFGGNRRGLYTIMVVPVKRTDGFITKVNRLIERRLLRHFSKKGYITWEEN
⊟Experimental data[edit source | edit]
- experimentally validated: no data available
⊟Expression & Regulation[edit source | edit]
⊟Operon[edit source | edit]
- SA_RS08045 no polycistronic organisation predicted
⊟Regulation[edit source | edit]
- sigma factor:
- regulator:
⊟Transcription pattern[edit source | edit]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit source | edit]
- Aureolib: no data available
⊟Protein stability[edit source | edit]
- half-life: no data available
⊟Biological Material[edit source | edit]
⊟Mutants[edit source | edit]
⊟Expression vector[edit source | edit]
⊟lacZ fusion[edit source | edit]
⊟GFP fusion[edit source | edit]
⊟two-hybrid system[edit source | edit]
⊟FLAG-tag construct[edit source | edit]
⊟Antibody[edit source | edit]
⊟Other Information[edit source | edit]
You are kindly invited to share additional interesting facts.
⊟Literature[edit source | edit]
⊟References[edit source | edit]
⊟Relevant publications[edit source | edit]