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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_000659
- pan locus tag?: SAUPAN002575000
- symbol: JSNZ_000659
- pan gene symbol?: —
- synonym:
- product: deoxyribodipyrimidine photo-lyase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_000659
- symbol: JSNZ_000659
- product: deoxyribodipyrimidine photo-lyase
- replicon: chromosome
- strand: +
- coordinates: 692802..694175
- length: 1374
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1321ATGGCAATTGCTGTGTTATTAAATCGAATGTTTCGAATGGAACACAATCCATTATTTGAA
TATATTTATCAACAAAAAGAAGACATTGATGCATGTTATTTTATCATTCCGGAAGAGGAC
ATGTCTTCAGCTTCTGATTTGAAAGCACAGTTTTATCGCGGTACTTTGCAGCGCTTTTAC
CAATCGTTGCACGCAGAAAAGCTCACACCTTATGTCATGTCTTATGACGATATCATTTCA
TTTTGTAAAGAAAACAATATATCTGAAGTAGTGATTGCGGGTGATATTATGAGTTATTAT
CTTGAAGAATATGATATTTTACATCAACGTTCTTTATTCAATGAAGCACGTATTGCCGTT
ACTTTAATACGTGGGAATCATTACTTTAAAGCGAGTAAAACAATGAATCAACAAGGGGAG
CCATACAAAGTTTTTACTAGTTTCTATAAAAAATGGCGACCTTACTTGAGGCATAGAGAC
GTATATCACTATGATTTAAAATCATTCGAAGACTTTGTCATTGCATCACCTGATGATTTA
GTGTTTGATGACATAGCGTTTGGATCCTCACAAATAATTGAACAGAATAAATGGCAACAT
TTTTTAGATCAAGATATACAGAATTACGAAAGCGGAAGAGACTATTTACCTGAAGTGTTA
ACAAGTCAGCTAAGTGTTGCTTTAGCATATGGATTATTAGATATTATTGAAATTTTTAAT
GATTTATTGGCGCGTTATGATCAAGATGAGGCAAACTATGAAGCATTTATACGTGAACTC
ATTTTTAGAGAATTTTATTATGTGTTAATGACACAGTATCCAGAAACCTCATACCAAGCT
TTCAAACCTAAATATCGACAGATAAAATGGTCGCAAAATGAAGCGGATTTTAATGCATGG
TGCGAAGGGCAAACAGGATTTCCAATCATTGATGCAGCAATAATGGAATTGACACAAACT
GGTTTTATGCATAATCGAATGAGAATGGTTGTGTCGCAATTTTTAACCAAAGATTTATTT
ATAGATTGGACATGGGGAGAAAAATTCTTTAGAAAGCACCTTATTGACTATGATGCAGCA
TCAAATATTCATGGATGGCAATGGTCTGCTTCTACAGGTACGGATGCAGTGCCGTATTTT
AGAATGTTTAATCCAATAAGACAGAGTGAACGCTTTGATGCTAAAGCTTTGTATATCAAA
ACATATCTTCCGATTTTTAATCAAATTGATGCAAAATATTTGCATGATACACAACGCAAT
GAGTCCAACCTTTTTGAACAGGGGATTGAATTAGGTCGTCATTATCCAAGACAAATGGTA
GATCATCAAGAAAAACGTACACAAGTTTTAGCTACATTTAAAGCGCTAGACTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_000659
- symbol: JSNZ_000659
- description: deoxyribodipyrimidine photo-lyase
- length: 457
- theoretical pI: 5.04693
- theoretical MW: 54490.2
- GRAVY: -0.442451
⊟Function[edit | edit source]
- reaction: EC 4.1.99.3? ExPASyDeoxyribodipyrimidine photo-lyase Cyclobutadipyrimidine (in DNA) = 2 pyrimidine residues (in DNA)
- TIGRFAM: DNA metabolism DNA replication, recombination, and repair deoxyribodipyrimidine photo-lyase, 8-HDF type (TIGR03556; EC 4.1.99.3; HMM-score: 247)and 4 moreCellular processes Adaptations to atypical conditions cryptochrome, DASH family (TIGR02765; HMM-score: 148.3)cryptochrome, plant family (TIGR02766; HMM-score: 145.8)DNA metabolism DNA replication, recombination, and repair deoxyribodipyrimidine photolyase (TIGR00591; EC 4.1.99.3; HMM-score: 17.9)Unknown function Enzymes of unknown specificity putative phosphoesterase (TIGR00024; EC 3.1.-.-; HMM-score: 17.3)
- TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
- PFAM: no clan defined FAD_binding_7; FAD binding domain of DNA photolyase (PF03441; HMM-score: 256.8)and 2 moreHUP (CL0039) DNA_photolyase; DNA photolyase (PF00875; HMM-score: 41.6)Calcineurin (CL0163) Metallophos; Calcineurin-like phosphoesterase (PF00149; HMM-score: 17.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9947
- Cytoplasmic Membrane Score: 0.0037
- Cell wall & surface Score: 0.0001
- Extracellular Score: 0.0015
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.001389
- TAT(Tat/SPI): 0.000095
- LIPO(Sec/SPII): 0.000339
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MAIAVLLNRMFRMEHNPLFEYIYQQKEDIDACYFIIPEEDMSSASDLKAQFYRGTLQRFYQSLHAEKLTPYVMSYDDIISFCKENNISEVVIAGDIMSYYLEEYDILHQRSLFNEARIAVTLIRGNHYFKASKTMNQQGEPYKVFTSFYKKWRPYLRHRDVYHYDLKSFEDFVIASPDDLVFDDIAFGSSQIIEQNKWQHFLDQDIQNYESGRDYLPEVLTSQLSVALAYGLLDIIEIFNDLLARYDQDEANYEAFIRELIFREFYYVLMTQYPETSYQAFKPKYRQIKWSQNEADFNAWCEGQTGFPIIDAAIMELTQTGFMHNRMRMVVSQFLTKDLFIDWTWGEKFFRKHLIDYDAASNIHGWQWSASTGTDAVPYFRMFNPIRQSERFDAKALYIKTYLPIFNQIDAKYLHDTQRNESNLFEQGIELGRHYPRQMVDHQEKRTQVLATFKALD
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- Operon-mapper [1] : JSNZ_000658 > JSNZ_000659
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
Bioinformatics: 2018, 34(23);4118-4120
[PubMed:29931111] [WorldCat.org] [DOI] (I p)