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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_000975
  • pan locus tag?: SAUPAN003193000
  • symbol: JSNZ_000975
  • pan gene symbol?: ltaA
  • synonym:
  • product: MFS transporter

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_000975
  • symbol: JSNZ_000975
  • product: MFS transporter
  • replicon: chromosome
  • strand: -
  • coordinates: 981442..982632
  • length: 1191
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGCAAGATTCTTCGTTAAATAATTACGCTAATCATAAAAATTTCATTTTAATGCTTATT
    ATCTTATTTTTAATGGAATTTGCGAGAGGCATGTATATCCTAAGCTATATTAATTTCTTG
    CCAACAGTTACATCCATTGCTGTAGCAATAACGTCTCTAGCATTTTCAATACATTTTATT
    GCTGATGCATCTACAAACTTTGTTATAGGATTTTTACTGAAAAAATTCGGCACAAAAATC
    GTTTTAACGACTGGATTTATTTTAGCATTTACAAGTTTATTTTTAGTTATTTGGTTTCCA
    GCATCACCTTTTGTAATCATATTTAGTGCTATGATGCTCGGTATTGCAGTTAGTCCTATT
    TGGGTAATTATGTTATCCAGTGTTGAAGAAGATAAACGTGGTAAACAAATGGGCTATGTT
    TATTTTTCATGGTTGTTAGGCCTATTGGTAGGTATGGTTTTTATGAATCTACTTATCAAA
    GTGCACCCAACACGCTTTGCCTTCATGATGTCTTTAGTCGTTTTAATTGCATGGATATTA
    TATTATTTTGTCGATGTAAAGTTAACAAATTATAATACTCGTCCAGTTAAAGCTCAATTG
    AGACAAATTGTTGATGTGACAAAGCGCCATTTATTGTTGTTCCCTGGTATTCTTTTACAA
    GGTGCCGCAATTGCTGCCCTAGTTCCTATATTACCAACATATGCTACTAAGGTTATTAAC
    GTAAGTACAATTGAATATACTGTTGCAATCATTATTGGTGGTATCGGCTGTGCAGTTTCG
    ATGCTATTTTTATCGAAACTAATAGATAACCGCAGCAGAAACTTTATGTATGGTGTTATT
    CTAAGCGGATTTATTTTATACATGATATTAATTTTCACTCTATCTATGATTGTTAATATT
    CACATCGTGTGGATTATCGCTTTAGCTATCGGTCTAATGTATGGCATCTTATTACCAGCA
    TGGAATACCTTTATGGCACGATTTATCAAATCAGATGAACAAGAAGAAACTTGGGGTGTT
    TTTAATAGTATCCAAGGATTCGGCTCAATGATCGGGCCATTATTTGGCGGATTAATTACA
    CAATTTACCAACAATTTAAACAATACATTTTATTTCTCGGCATTAATCTTTTTAGTCTTA
    GCTGTATTTTATGGAAGCTACTTTATAGCAAATAGAGAAAAAGCTAAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1191

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_000975
  • symbol: JSNZ_000975
  • description: MFS transporter
  • length: 396
  • theoretical pI: 9.91563
  • theoretical MW: 44575.3
  • GRAVY: 0.947475

⊟Function[edit | edit source]

  • TIGRFAM:
    multidrug resistance protein (TIGR00880; HMM-score: 47)
    and 4 more
    Metabolism Transport and binding proteins Cations and iron carrying compounds H+ Antiporter protein (TIGR00900; HMM-score: 23)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids D-galactonate transporter (TIGR00893; HMM-score: 17.9)
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids phosphoglycerate transporter family protein (TIGR00881; HMM-score: 7.1)
    Metabolism Transport and binding proteins Other glycerol-3-phosphate transporter (TIGR00712; HMM-score: 5.2)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    MFS (CL0015) MFS_1; Major Facilitator Superfamily (PF07690; HMM-score: 153.2)
    and 2 more
    MFS_1_like; MFS_1 like family (PF12832; HMM-score: 16.2)
    ATG22; Vacuole effluxer Atg22 like (PF11700; HMM-score: 5.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 12
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9993
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0007
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.01558
    • TAT(Tat/SPI): 0.000283
    • LIPO(Sec/SPII): 0.00202
  • predicted transmembrane helices (TMHMM): 12

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MQDSSLNNYANHKNFILMLIILFLMEFARGMYILSYINFLPTVTSIAVAITSLAFSIHFIADASTNFVIGFLLKKFGTKIVLTTGFILAFTSLFLVIWFPASPFVIIFSAMMLGIAVSPIWVIMLSSVEEDKRGKQMGYVYFSWLLGLLVGMVFMNLLIKVHPTRFAFMMSLVVLIAWILYYFVDVKLTNYNTRPVKAQLRQIVDVTKRHLLLFPGILLQGAAIAALVPILPTYATKVINVSTIEYTVAIIIGGIGCAVSMLFLSKLIDNRSRNFMYGVILSGFILYMILIFTLSMIVNIHIVWIIALAIGLMYGILLPAWNTFMARFIKSDEQEETWGVFNSIQGFGSMIGPLFGGLITQFTNNLNNTFYFSALIFLVLAVFYGSYFIANREKAK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
    Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes.
    Bioinformatics: 2018, 34(23);4118-4120
    [PubMed:29931111] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

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