Jump to navigation
Jump to search
NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL1021 [new locus tag: SACOL_RS05210 ]
- pan locus tag?: SAUPAN003193000
- symbol: SACOL1021
- pan gene symbol?: ltaA
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL1021 [new locus tag: SACOL_RS05210 ]
- symbol: SACOL1021
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1029317..1030507
- length: 1191
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3237297 NCBI
- RefSeq: YP_185887 NCBI
- BioCyc: see SACOL_RS05210
- MicrobesOnline: 912489 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141ATGCAAGATTCTTCGTTAAATAATTACGCTAATCATAAAAATTTCATTTTAATGCTTATT
ATCTTATTTTTAATGGAATTTGCGAGAGGCATGTATATCCTAAGCTATATTAATTTCTTG
CCAACAGTTACATCCATTGCTGTAGCAATAACGTCTCTAGCATTTTCAATACATTTTATT
GCTGATGCATCTACAAACTTTGTTATAGGATTTTTACTGAAAAAATTCGGCACAAAAATC
GTTTTAACGACTGGATTTATTTTAGCATTTACAAGTTTATTTTTAGTTATTTGGTTTCCA
GCATCACCTTTTGTAATCATATTTAGTGCTATGATGCTCGGTATTGCAGTTAGTCCTATT
TGGGTCATTATGTTATCCAGTGTTGAAGAAGATAAACGTGGCAAACAAATGGGCTATGTT
TATTTTTCATGGTTGTTAGGCCTATTGGTAGGTATGGTTTTTATGAATCTACTTATCAAA
GTGCACCCAACACGCTTTGCCTTCATGATGTCTTTAGTCGTTTTAATTGCATGGATATTA
TATTATTTTGTCGATGTAAAGTTAACAAATTATAATACTCGTCCAGTTAAAGCTCAATTG
AGACAAATTGTTGATGTGACAAAGCGCCATTTATTGTTGTTCCCTGGTATTCTTTTACAA
GGTGCCGCAATTGCTGCCCTAGTTCCTATATTACCAACATATGCTACTAAGGTTATTAAC
GTAAGCACAATTGAATATACTGTTGCAATCATTATTGGTGGTATCGGCTGTGCAGTTTCG
ATGCTATTTTTATCGAAACTAATAGATAACCGCAGCAGAAACTTTATGTATGGTGTTATT
CTAAGCGGATTTATTTTATACATGATATTAATTTTTACTCTATCTATGATTGTTAATATT
CACATCTTGTGGATTATCGCTTTAGCTATCGGTCTAATGTATGGCATCTTATTACCAGCA
TGGAATACCTTTATGGCACGATTTATCAAATCAGATGAACAAGAAGAAACTTGGGGTGTT
TTTAATAGTATCCAAGGATTCGGCTCAATGATAGGGCCATTATTTGGCGGATTAATTACA
CAATTTACCAACAATTTAAACAATACATTTTATTTCTCGGCATTAATCTTTTTAGTCTTA
GCTGTATTTTATGGAAGCTACTTTATAGTAAATAGAGAAAAAGCTAAGTAA60
120
180
240
300
360
420
480
540
600
660
720
780
840
900
960
1020
1080
1140
1191
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL1021 [new locus tag: SACOL_RS05210 ]
- symbol: SACOL1021
- description: hypothetical protein
- length: 396
- theoretical pI: 9.91563
- theoretical MW: 44617.4
- GRAVY: 0.952525
⊟Function[edit | edit source]
- TIGRFAM: multidrug resistance protein (TIGR00880; HMM-score: 50)and 5 moreTransport and binding proteins Cations and iron carrying compounds H+ Antiporter protein (TIGR00900; HMM-score: 21)Transport and binding proteins Carbohydrates, organic alcohols, and acids D-galactonate transporter (TIGR00893; HMM-score: 19.6)Transport and binding proteins Other glycerol-3-phosphate transporter (TIGR00712; HMM-score: 16.3)Transport and binding proteins Carbohydrates, organic alcohols, and acids phosphoglycerate transporter family protein (TIGR00881; HMM-score: 10.1)drug resistance transporter, Bcr/CflA subfamily (TIGR00710; HMM-score: 6.7)
- TheSEED :
- FIG01107905: hypothetical protein
- PFAM: MFS (CL0015) MFS_1; Major Facilitator Superfamily (PF07690; HMM-score: 132.2)and 2 moreMFS_1_like; MFS_1 like family (PF12832; HMM-score: 14.9)ATG22; Vacuole effluxer Atg22 like (PF11700; HMM-score: 7.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 12
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -0.5
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.01558
- TAT(Tat/SPI): 0.000283
- LIPO(Sec/SPII): 0.00202
- predicted transmembrane helices (TMHMM): 12
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MQDSSLNNYANHKNFILMLIILFLMEFARGMYILSYINFLPTVTSIAVAITSLAFSIHFIADASTNFVIGFLLKKFGTKIVLTTGFILAFTSLFLVIWFPASPFVIIFSAMMLGIAVSPIWVIMLSSVEEDKRGKQMGYVYFSWLLGLLVGMVFMNLLIKVHPTRFAFMMSLVVLIAWILYYFVDVKLTNYNTRPVKAQLRQIVDVTKRHLLLFPGILLQGAAIAALVPILPTYATKVINVSTIEYTVAIIIGGIGCAVSMLFLSKLIDNRSRNFMYGVILSGFILYMILIFTLSMIVNIHILWIIALAIGLMYGILLPAWNTFMARFIKSDEQEETWGVFNSIQGFGSMIGPLFGGLITQFTNNLNNTFYFSALIFLVLAVFYGSYFIVNREKAK
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Dörte Becher, Kristina Hempel, Susanne Sievers, Daniela Zühlke, Jan Pané-Farré, Andreas Otto, Stephan Fuchs, Dirk Albrecht, Jörg Bernhardt, Susanne Engelmann, Uwe Völker, Jan Maarten van Dijl, Michael Hecker
A proteomic view of an important human pathogen--towards the quantification of the entire Staphylococcus aureus proteome.
PLoS One: 2009, 4(12);e8176
[PubMed:19997597] [WorldCat.org] [DOI] (I e)