From AureoWiki
Jump to navigation Jump to search

FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_001105
  • pan locus tag?: SAUPAN003376000
  • symbol: rnhC
  • pan gene symbol?: rnhC
  • synonym:
  • product: ribonuclease HIII

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_001105
  • symbol: rnhC
  • product: ribonuclease HIII
  • replicon: chromosome
  • strand: -
  • coordinates: 1109598..1110536
  • length: 939
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGGCGAATATCGTTTTTAAATTGTCGGATAAAGACATAACGACATTAATGTCACGCATT
    ACTTTTGATACTGAGAATTTACCTCAAGGTATGAAAGCACGTGCAAAGTATCAAAATACA
    ACTGTAAATATTTACCAATCAGGTAAAGTCATGTTTCAAGGTAATCATGCAGAAGCTGTG
    TCTAAAGAACTTCTACCGCAGCATTCTCAATTGAATACTAATAAAACTAAAAAGAAAAAT
    ATGGCTAATTCTTTTCTTGAACAAACTTTAATGTATGATCAATTTAACTGTATTGGTAGT
    GATGAAGCTGGAAGTGGCGATTACTTTGGTCCATTGACTGTATGTGCTGCTTTCGTTACC
    AAAGAGCATGTCCCTATTTTAAAAACTTTGGGTGTAGATGATTCAAAAAAATTAACCGAT
    ACCAAAATTGTAGAACTTGCTGAGCAATTGGTTACTTTCATCCCACATTCATTATTAACA
    CTACACAATGAAAAATATAATATTCAGCAAGCAAAAGGCTGGACTCAAGTAAAAATGAAA
    GCTGTTCTTCATAATGAAGCCATCAAAAATGTACTTGAAAAAATTGATTCGTCTCAATTA
    GACTATATCGTCATTGATCAGTTCGCAAAACGCGAAGTGTATAACCATTACGCATTATCC
    GATATACCACTTCCAAAGAAAACAAAATTTGAAACAAAAGGAGAATCGAAGTCATTAGCC
    ATTGCAGTGGCAAGCATAATCTCTCGATACGCATTTGTTACATATATGGATCAAATATCA
    AAAAATATTAATATGACGATTCCTAAAGGTGCCGGTGCTAAAGTCGATGTAATCGCCGCC
    AAAATTATAAAAAAATACGGTCTTTCACGTTTAGATACCATTTCAAAAAAGCATTTTAAA
    AATCGTGAAAAAGCCCAAAAAATTTTAAAGCCTCTTTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    939

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_001105
  • symbol: RnhC
  • description: ribonuclease HIII
  • length: 312
  • theoretical pI: 10.0499
  • theoretical MW: 35122.5
  • GRAVY: -0.335256

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing DNA metabolism DNA replication, recombination, and repair ribonuclease HIII (TIGR00716; EC 3.1.26.4; HMM-score: 231.4)
    and 2 more
    Genetic information processing DNA metabolism DNA replication, recombination, and repair ribonuclease HII (TIGR00729; EC 3.1.26.4; HMM-score: 62.6)
    Metabolism Energy metabolism Electron transport ubiquinol-cytochrome c reductase, iron-sulfur subunit (TIGR01416; EC 1.10.2.2; HMM-score: 10.4)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    RNase_H (CL0219) RNase_HII; Ribonuclease HII (PF01351; HMM-score: 161.9)
    and 4 more
    TBP-like (CL0407) DUF3378; Domain of unknown function (DUF3378) (PF11858; HMM-score: 79.3)
    no clan defined RnlA_toxin; RNase LS, bacterial toxin (PF15935; HMM-score: 18.4)
    AcMNPV_Ac75; Autographa californica nuclear polyhedrosis virus (AcMNPV), Ac75 (PF06648; HMM-score: 13.4)
    TBP-like (CL0407) TBP; Transcription factor TFIID (or TATA-binding protein, TBP) (PF00352; HMM-score: 12.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9578
    • Cytoplasmic Membrane Score: 0.0047
    • Cell wall & surface Score: 0.0069
    • Extracellular Score: 0.0305
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.012776
    • TAT(Tat/SPI): 0.000911
    • LIPO(Sec/SPII): 0.001623
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MANIVFKLSDKDITTLMSRITFDTENLPQGMKARAKYQNTTVNIYQSGKVMFQGNHAEAVSKELLPQHSQLNTNKTKKKNMANSFLEQTLMYDQFNCIGSDEAGSGDYFGPLTVCAAFVTKEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMKAVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYNHYALSDIPLPKKTKFETKGESKSLAIAVASIISRYAFVTYMDQISKNINMTIPKGAGAKVDVIAAKIIKKYGLSRLDTISKKHFKNREKAQKILKPL

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=JSNZ_001105&oldid=106746"