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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003376000
- symbol?: rnhC
- description?: ribonuclease HIII
- ribonuclease HIII
- putative ribonuclease
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 3739984..3740925
- synteny block?: BlockID0024590
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1096
08BA02176:
C248_1167
11819-97:
MS7_1096 (rnhC)
6850:
RSAU_001024 (rnhC)
71193:
ST398NM01_1136
ECT-R 2:
ECTR2_994 (rnhC)
ED133:
SAOV_1136c
ED98:
SAAV_1107 (rnhC)
HO 5096 0412:
SAEMRSA15_09700
JH1:
SaurJH1_1221
JH9:
SaurJH9_1199
JKD6008:
SAA6008_01094 (rnhC)
JKD6159:
SAA6159_00994 (rnhC)
LGA251:
SARLGA251_10520
M013:
M013TW_1073
MRSA252:
SAR1113
MSHR1132:
SAMSHR1132_09860
MSSA476:
SAS1074
Mu3:
SAHV_1131
Mu50:
SAV1140
MW2:
MW1023
RF122:
SAB1004c
ST398:
SAPIG1136 (rnhC)
T0131:
SAT0131_01182
TCH60:
HMPREF0772_12093 (rnhC)
TW20:
SATW20_11340 (rnhC)
USA300_TCH1516:
USA300HOU_1075 (rnhC)
VC40:
SAVC_04865
⊟Genome Viewer[edit | edit source]
| COL chromosome | |
| N315 chromosome | |
| NCTC8325 chromosome | |
| Newman chromosome | |
| USA300_FPR3757 chromosome |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MANIVFKLSDKDITTLMSRISFDTENLPQGMKARAKYQNTTVNIYQSGKVMFQGNHAEAV
N315 MANIVFKLSDKDITTLMSRITFDTENLPQGMKARAKYQNTTVNIYQSGKVMFQGNHAEAV
NCTC8325 MANIVFKLSDKDITTLMSRISFDTENLPQGMKARAKYQNTTVNIYQSGKVMFQGNHAEAV
Newman MANIVFKLSDKDITTLMSRISFDTENLPQGMKARAKYQNTTVNIYQSGKVMFQGNHAEAV
USA300_FPR3757 MANIVFKLSDKDITTLMSRISFDTENLPQGMKARAKYQNTTVNIYQSGKVMFQGNHAEAV
********************:***************************************
COL SEELLPQHSQLNTNKTKKKNMANSFLEQTLMYDQFNCIGSDEAGSGDYFGPLTVCAAFVT
N315 SKELLPQHSQLNTNKTKKKNMANSSLEQTLMYDQFNCIGSDEAGSGDYFGPLTVCAAFVT
NCTC8325 SEELLPQHSQLNTNKTKKKNMANSFLEQTLMYDQFNCIGSDEAGSGDYFGPLTVCAAFVT
Newman SEELLPQHSQLNTNKTKKKNMANSFLEQTLMYDQFNCIGSDEAGSGDYFGPLTVCAAFVT
USA300_FPR3757 SEELLPQHSQLNTNKTKKKNMANSFLEQTLMYDQFNCIGSDEAGSGDYFGPLTVCAAFVT
*:********************** ***********************************
COL KEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMK
N315 KEHVPILKTLGVDDSKKLTDTKIVELAEQLVAFIPHSLLTLHNDKYNIQQAKGWTQVKMK
NCTC8325 KEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMK
Newman KEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMK
USA300_FPR3757 KEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMK
*******************************:***********:****************
COL AALHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLA
N315 AVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLA
NCTC8325 AALHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLA
Newman AALHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLA
USA300_FPR3757 AALHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLA
*.**********************************************************
COL IAVASIISRYAFVTYMDQISKNINMTIPKGAGAKVDVIAAKIIKKYGLSRLDTISKKHFK
N315 IAVASIISRYAFITYMDQISKYINMTIPKGAGAKVDVIAAKIIKKYGLSRLDTISKKHFK
NCTC8325 IAVASIISRYAFVTYMDQISKNINMTIPKGAGAKVDVIAAKIIKKYGLSRLDTISKKHFK
Newman IAVASIISRYAFVTYMDQISKNINMTIPKGAGAKVDVIAAKIIKKYGLSRLDTISKKHFK
USA300_FPR3757 IAVASIISRYAFVTYMDQISKNINMTIPKGAGAKVDVIAAKIIKKYGLSRLDTISKKHFK
************:******** **************************************
COL NREKAQKILKPL
N315 NREKAQKILKPL
NCTC8325 NREKAQKILKPL
Newman NREKAQKILKPL
USA300_FPR3757 NREKAQKILKPL
************