⊟Summary

• pan ID^?: SAUPAN003376000
• symbol^?: rnhC
• description^?: ribonuclease HIII

  descriptions from strain specific annotations:

  • ribonuclease HIII
  • putative ribonuclease
• strand^?: -
• coordinates^?: 3739984..3740925
• synteny block^?: BlockID0024590
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1150 (rnhC)
N315:
SA0987
NCTC8325:
SAOUHSC_01095
Newman:
NWMN_1051
USA300_FPR3757:
SAUSA300_1039 (rnhC)
04-02981:
SA2981_1096
08BA02176:
C248_1167
11819-97:
MS7_1096 (rnhC)
6850:
RSAU_001024 (rnhC)
71193:
ST398NM01_1136
ECT-R 2:
ECTR2_994 (rnhC)
ED133:
SAOV_1136c
ED98:
SAAV_1107 (rnhC)
HO 5096 0412:
SAEMRSA15_09700
JH1:
SaurJH1_1221
JH9:
SaurJH9_1199
JKD6008:
SAA6008_01094 (rnhC)
JKD6159:
SAA6159_00994 (rnhC)
LGA251:
SARLGA251_10520
M013:
M013TW_1073
MRSA252:
SAR1113
MSHR1132:
SAMSHR1132_09860
MSSA476:
SAS1074
Mu3:
SAHV_1131
Mu50:
SAV1140
MW2:
MW1023
RF122:
SAB1004c
ST398:
SAPIG1136 (rnhC)
T0131:
SAT0131_01182
TCH60:
HMPREF0772_12093 (rnhC)
TW20:
SATW20_11340 (rnhC)
USA300_TCH1516:
USA300HOU_1075 (rnhC)
VC40:
SAVC_04865

⊟Genome Viewer

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MANIVFKLSDKDITTLMSRISFDTENLPQGMKARAKYQNTTVNIYQSGKVMFQGNHAEAV
  N315            MANIVFKLSDKDITTLMSRITFDTENLPQGMKARAKYQNTTVNIYQSGKVMFQGNHAEAV
  NCTC8325        MANIVFKLSDKDITTLMSRISFDTENLPQGMKARAKYQNTTVNIYQSGKVMFQGNHAEAV
  Newman          MANIVFKLSDKDITTLMSRISFDTENLPQGMKARAKYQNTTVNIYQSGKVMFQGNHAEAV
  USA300_FPR3757  MANIVFKLSDKDITTLMSRISFDTENLPQGMKARAKYQNTTVNIYQSGKVMFQGNHAEAV
                  ********************:***************************************
  
  COL             SEELLPQHSQLNTNKTKKKNMANSFLEQTLMYDQFNCIGSDEAGSGDYFGPLTVCAAFVT
  N315            SKELLPQHSQLNTNKTKKKNMANSSLEQTLMYDQFNCIGSDEAGSGDYFGPLTVCAAFVT
  NCTC8325        SEELLPQHSQLNTNKTKKKNMANSFLEQTLMYDQFNCIGSDEAGSGDYFGPLTVCAAFVT
  Newman          SEELLPQHSQLNTNKTKKKNMANSFLEQTLMYDQFNCIGSDEAGSGDYFGPLTVCAAFVT
  USA300_FPR3757  SEELLPQHSQLNTNKTKKKNMANSFLEQTLMYDQFNCIGSDEAGSGDYFGPLTVCAAFVT
                  *:********************** ***********************************
  
  COL             KEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMK
  N315            KEHVPILKTLGVDDSKKLTDTKIVELAEQLVAFIPHSLLTLHNDKYNIQQAKGWTQVKMK
  NCTC8325        KEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMK
  Newman          KEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMK
  USA300_FPR3757  KEHVPILKTLGVDDSKKLTDTKIVELAEQLVTFIPHSLLTLHNEKYNIQQAKGWTQVKMK
                  *******************************:***********:****************
  
  COL             AALHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLA
  N315            AVLHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLA
  NCTC8325        AALHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLA
  Newman          AALHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLA
  USA300_FPR3757  AALHNEAIKNVLEKIDSSQLDYIVIDQFAKREVYSHYALSDIPLPKKTKFETKGESKSLA
                  *.**********************************************************
  
  COL             IAVASIISRYAFVTYMDQISKNINMTIPKGAGAKVDVIAAKIIKKYGLSRLDTISKKHFK
  N315            IAVASIISRYAFITYMDQISKYINMTIPKGAGAKVDVIAAKIIKKYGLSRLDTISKKHFK
  NCTC8325        IAVASIISRYAFVTYMDQISKNINMTIPKGAGAKVDVIAAKIIKKYGLSRLDTISKKHFK
  Newman          IAVASIISRYAFVTYMDQISKNINMTIPKGAGAKVDVIAAKIIKKYGLSRLDTISKKHFK
  USA300_FPR3757  IAVASIISRYAFVTYMDQISKNINMTIPKGAGAKVDVIAAKIIKKYGLSRLDTISKKHFK
                  ************:******** **************************************
  
  COL             NREKAQKILKPL
  N315            NREKAQKILKPL
  NCTC8325        NREKAQKILKPL
  Newman          NREKAQKILKPL
  USA300_FPR3757  NREKAQKILKPL
                  ************