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FunGene: 08-OCT-2024

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus JSNZ
  • locus tag: JSNZ_001592
  • pan locus tag?: SAUPAN004195000
  • symbol: JSNZ_001592
  • pan gene symbol?: —
  • synonym:
  • product: Fic family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JSNZ_001592
  • symbol: JSNZ_001592
  • product: Fic family protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1626703..1627923
  • length: 1221
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Gene ID:
  • RefSeq:
  • BioCyc:
  • MicrobesOnline:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGGGTTACAGAACTTTAAAAAGTATTTTTCATGAACACAATGAAAGTAAAATGAAGGAA
    GAGTATACTAAAAGATTTAATTCTTTAGCTTCTTTCAATACTAATATTAATATCATACCT
    ATGGAAAATGGAAAAAAAGTTAATGATTTGGAATATCCTCTATTCTTTATGGTGACTAAA
    AATCTATCAAAAAAACAAGAATTAATATCAATTAATAGTAGAAAAATTGATAGAGCACTT
    AATTCTTTACCATATGCAGCTAGAGAACAATATTTTAATGATTTATTAATCGATGAATTA
    CAAAGTACTAATGAAATTGAAAATGTATTTAGTACTAAACAAGAGATTGCACATGCGTTA
    AATAACCAAGCATCAGAATTTCTTAAGTTCAGAGGCCTCGTGGATCAATATAAAGAGATA
    GAACTTAATAAAAAAATTAAAGTTGATAATGTAAGAGACATTAGAGCGATTTATGATAAA
    TTAGTTTCAAATGAAATTAACGAACAAGATAAGTTAGATGGAGAGCTATTTCGTAAAAAT
    TTTGTCGGTGTGCATGATGGGTCAACGAATAAATACATACATGTTGGGTTACAACCTGAA
    ACCAAAATTGTTGAATATATAGGTGAAATGCTAACATTTTTAAAATATTTTGATGCGCCT
    CAGCCGTTCAAAATCATGGCTAGTCATTATCTGTTTGAATATATACATCCTTTTTATGAT
    GGCAATGGTAGAGTTGGAAGATTTATAATTGCCAAGCTCTTGAGTGATTATTATGATAAT
    TATACTGCTTTGACATTTTCATATGTTATAAATAGAAATAAATCGAAATATTACAAGGCG
    TTTATGACTGCTTCAAATTATTTGAATTGTGGTGATTTGACGGAATTTATTGACACAATG
    CTTGAGCTATTGATAGCAGGACAAGAAAGAATACTTGATGAGTTAATACCAAAAATGGAT
    GCGACTGAAAAATTAACGCTTTATTTAACTAGTCATTATAAACAGATAGATTATGAATTT
    TTGTATCTCCTTTCAATGGATAAATTGTTTGGAAATAAAAGAAATAGATTAACATTAATT
    GATTTAGAAAGCATATTGGGAGTAGGAAGAGTAAAAATTAATAATACAATTAAAAAATAT
    GATAACTACTTAGTTAAAATTAAAAGTAGACCAACAATTTATGAGATAAGTGATGAATTT
    CTAAATTCGATTATAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1221

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JSNZ_001592
  • symbol: JSNZ_001592
  • description: Fic family protein
  • length: 406
  • theoretical pI: 7.75396
  • theoretical MW: 47687.4
  • GRAVY: -0.410099

⊟Function[edit | edit source]

  • TIGRFAM:
    mobile mystery protein B (TIGR02613; HMM-score: 18.1)
  • TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
  • PFAM:
    no clan defined Fic; Fic/DOC family (PF02661; HMM-score: 53.2)
    and 2 more
    DUF1878; Protein of unknown function (DUF1878) (PF08963; HMM-score: 16.8)
    SOTI; Male-specific protein scotti (PF17079; HMM-score: 12.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.7781
    • Cytoplasmic Membrane Score: 0.0261
    • Cell wall & surface Score: 0.0007
    • Extracellular Score: 0.1951
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00597
    • TAT(Tat/SPI): 0.000747
    • LIPO(Sec/SPII): 0.001066
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq:
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MGYRTLKSIFHEHNESKMKEEYTKRFNSLASFNTNINIIPMENGKKVNDLEYPLFFMVTKNLSKKQELISINSRKIDRALNSLPYAAREQYFNDLLIDELQSTNEIENVFSTKQEIAHALNNQASEFLKFRGLVDQYKEIELNKKIKVDNVRDIRAIYDKLVSNEINEQDKLDGELFRKNFVGVHDGSTNKYIHVGLQPETKIVEYIGEMLTFLKYFDAPQPFKIMASHYLFEYIHPFYDGNGRVGRFIIAKLLSDYYDNYTALTFSYVINRNKSKYYKAFMTASNYLNCGDLTEFIDTMLELLIAGQERILDELIPKMDATEKLTLYLTSHYKQIDYEFLYLLSMDKLFGNKRNRLTLIDLESILGVGRVKINNTIKKYDNYLVKIKSRPTIYEISDEFLNSIIK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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