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FunGene: 08-OCT-2024
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus JSNZ
- locus tag: JSNZ_002576
- pan locus tag?: SAUPAN006278000
- symbol: JSNZ_002576
- pan gene symbol?: —
- synonym:
- product: CocE/NonD family hydrolase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JSNZ_002576
- symbol: JSNZ_002576
- product: CocE/NonD family hydrolase
- replicon: chromosome
- strand: +
- coordinates: 2580491..2582173
- length: 1683
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID:
- RefSeq:
- BioCyc:
- MicrobesOnline:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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1681ATGAACCAACATCTACTAGGAAATCCAAAATTAACTGTAACTCATGTCAATGAAGTGAAA
GCCGGTATTAACCACATCGTTGTCGACAGTGTTCAATATGGAAATCAAGAAATGATTATG
GAAAAAGATGTCACTGTGGAAATGCGCGATGGCGAAAAATTATATATTAATATTTTCAGA
CCAAACAAAGATGGACAATTCCCTGTAGTTATGTCTGCAGATACTTACGGTAAAGATAAT
AAGCCTAAAATTAACAATATGGGTCCACTTTGGCCAACATTAGGTGCCATTCCGACATCT
AGTTTTACACCTGAAGAATCACCAGACCCAGGATTTTGGGTGCCAAATGATTATGTTGTA
GTTAAAGTTGCATTACGCGGTAGTGACAAATCCAAAGGCGTCTTATCTCCATGGTCAAAA
AGAGAAGCGGAAGATTATTACGAAGTGATTGAATGGGCAGCAAAACAGCCATGGAGTAAT
GGAAATATCGGAACAAATGGTGTTTCTTATCTTGCGGTGACTCAATGGTGGGTCGCATCA
TTAAATCCACCACATTTAAAAGCAATGATTCCTTGGGAAGGATTAAATGATATGTATAGA
GAAGTAGCCTTTCACGGGGGTATTCCTGATACTGGCTTTTATCGTTTCTGGATACAAGGT
ATTTTTGCGAGATGGACAGATAATCCAAATATCGAAGACATGATTCAAGCACAACAAGAA
CACCCTTTGTTCGATGATTTTTGGAAGCAGCGTCAAGTGCCATTATCACAAATTAAAACA
CCTCTACTAACATGTGCTAGTTGGTCTACACAAGGTTTGCACAACCGTGGCTCTTTTGAA
GGTTTTAAACAAGCTGCATCTGAAGAAAAATGGCTATATGTGCATGGACGTAAAGAGTGG
GAAAGTTACTACGCTAGAGAAAATCTCGAACGCCAAAAATCATTCTTTGATTTTTACCTT
AAAGAAGAAAATAACGATTGGAAAGATACGCCTCATGTCATTTATGAAGTTAGAGATCAA
TTTTATAAAGGCGAATTCAAATCAGCCTCAGCGTTCCCTTTACCTAACACAGAATATACA
CCATTGTATTTGAATGCTGAAAATCACACATTGAATCATGCAAAGATTAGTAGCGCGCAT
GTCGCACAATATGACTCTGAAGATAAACGACAAGATGTAAGTTTTAAATATACGTTTGAC
AAAGATACTGAGTTAGTTGGAAACATGAACTTAAAACTATGGGTAAGCACTAAAGACTCA
GACGATATGGATTTATTTGCAGGTATTAAAAAGTTAGATCGTCGTGGTAATGAAGTTAAC
TTCCCTGATTTTAATCATATTGAAAATGGTCAAGTAGCTACCGGTTGGTTACGCGTATCA
CATCGTGAATTAGATCAAGAAAAATCCACAATTGCGCAACCTTGGCATAAACATGAAACA
GAATTAAAGTTGTCACAAGATGATATTGTACCTGTTGAAATCGAATTGTTACCTTCAGGC
ACGCTATTTAAACAAGGCGAAACATTGGAAGTTGTTGTAAAAGGTAGTGAAATTGTAATT
GGTAATAGTACCCCTGGCATGAAAACGCGTTATGAACATGAAGAAACCGTAAATAAAGGC
ATGCACATGATTTATACTGGTGGTAAATATGATTCACAATTAATCATTCCTATCGTTAAT
TGA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JSNZ_002576
- symbol: JSNZ_002576
- description: CocE/NonD family hydrolase
- length: 560
- theoretical pI: 5.38608
- theoretical MW: 64410.8
- GRAVY: -0.6375
⊟Function[edit | edit source]
- TIGRFAM: Unknown function Enzymes of unknown specificity hydrolase CocE/NonD family protein (TIGR00976; HMM-score: 256.5)
- TheSEED: data available for COL, N315, NCTC8325, Newman, USA300_FPR3757
- PFAM: GBD (CL0202) PepX_C; X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain (PF08530; HMM-score: 179.5)and 1 moreAB_hydrolase (CL0028) Peptidase_S15; X-Pro dipeptidyl-peptidase (S15 family) (PF02129; HMM-score: 143.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.7162
- Cytoplasmic Membrane Score: 0.0182
- Cell wall & surface Score: 0.0022
- Extracellular Score: 0.2634
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.007238
- TAT(Tat/SPI): 0.00025
- LIPO(Sec/SPII): 0.000668
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
- MNQHLLGNPKLTVTHVNEVKAGINHIVVDSVQYGNQEMIMEKDVTVEMRDGEKLYINIFRPNKDGQFPVVMSADTYGKDNKPKINNMGPLWPTLGAIPTSSFTPEESPDPGFWVPNDYVVVKVALRGSDKSKGVLSPWSKREAEDYYEVIEWAAKQPWSNGNIGTNGVSYLAVTQWWVASLNPPHLKAMIPWEGLNDMYREVAFHGGIPDTGFYRFWIQGIFARWTDNPNIEDMIQAQQEHPLFDDFWKQRQVPLSQIKTPLLTCASWSTQGLHNRGSFEGFKQAASEEKWLYVHGRKEWESYYARENLERQKSFFDFYLKEENNDWKDTPHVIYEVRDQFYKGEFKSASAFPLPNTEYTPLYLNAENHTLNHAKISSAHVAQYDSEDKRQDVSFKYTFDKDTELVGNMNLKLWVSTKDSDDMDLFAGIKKLDRRGNEVNFPDFNHIENGQVATGWLRVSHRELDQEKSTIAQPWHKHETELKLSQDDIVPVEIELLPSGTLFKQGETLEVVVKGSEIVIGNSTPGMKTRYEHEETVNKGMHMIYTGGKYDSQLIIPIVN
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]