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NCBI: 06-JUL-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_0148 [new locus tag: NWMN_RS00810 ]
  • pan locus tag?: SAUPAN001061000
  • symbol: NWMN_0148
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_0148 [new locus tag: NWMN_RS00810 ]
  • symbol: NWMN_0148
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 188709..189482
  • length: 774
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGAAAGCACATAAAATTTTCTGGTTAAACTTAGCAGCAATTATTATTATTTCAATTGTA
    GTCAGTGGCGATATGTTTTTGGCAATGAAGTGGGAACAAATTCATTTGAAAGATGGTCTT
    AAAAAAGTACTAAGTACGTATCCTATTAAAAACTTAGAAACGCTTTATGAAATTGATGGT
    CACGATAATCCCCATTATGAAAATAATGATCAAGACACATGGTATATAGAATCTTCTTAT
    TCAGTTGTTGGATCAGATGAGCTTTTAAAAGAAGACCGTATGTTGTTAAAGGTAGATAAG
    AACACACATAAAATAACTGGTGAATATGACACAACTACAAACGATAAAAAAAATGCTACT
    GACTCGACATACAAAAGTTATCCAGTAAAAGTAGTTAATAATAAAATCGTTTTCACAAAA
    GACGTAAAAGATCCCGCGCTGAAACAAAAAATCGAAAACAATCAATTTTTGATTCAAAGT
    GGTGATTTAACAAGCATTTTAAATAGCAATGATTTGAAAGTCACACATGATCCTACCACT
    GATTATTATAATTTATCTGGTAAGTTGTCGAACGATAATCCAAACGTTAAACAATTAAAA
    CGTAGATATAATATTCCTAAAAACGCATCAACAAAGGTGGAATTAAAGGGAATGAGTGAT
    TTAAAAGGCAATAATCATCAAGATCAGAAACTTTATTTTTATTTTTCAAGTCCTGGAAAA
    GACCAAATCATTTATAAAGAAAGCCTTACTTATAATAAAATAAGTGAACATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    774


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: NWMN_0148 [new locus tag: NWMN_RS00810 ]
  • symbol: NWMN_0148
  • description: hypothetical protein
  • length: 257
  • theoretical pI: 8.55475
  • theoretical MW: 29648.3
  • GRAVY: -0.729183

⊟Function[edit | edit source]

  • TIGRFAM:
    Staphylococcus tandem lipoproteins (TIGR01742; HMM-score: 397.4)
  • TheSEED  :
    • FIG01107907: hypothetical protein
  • PFAM:
    LolA_LolB (CL0048) DUF576; Csa1 family (PF04507; HMM-score: 289.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helix: 1
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.9389
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0609
  • LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -0.5
    • N-terminally Anchored Score: 4
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: Signal peptide SP(Sec/SPI) length 28 aa
    • SP(Sec/SPI): 0.465262
    • TAT(Tat/SPI): 0.001453
    • LIPO(Sec/SPII): 0.129551
    • Cleavage Site: CS pos: 28-29. FLA-MK. Pr: 0.2087
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKAHKIFWLNLAAIIIISIVVSGDMFLAMKWEQIHLKDGLKKVLSTYPIKNLETLYEIDGHDNPHYENNDQDTWYIESSYSVVGSDELLKEDRMLLKVDKNTHKITGEYDTTTNDKKNATDSTYKSYPVKVVNNKIVFTKDVKDPALKQKIENNQFLIQSGDLTSILNSNDLKVTHDPTTDYYNLSGKLSNDNPNVKQLKRRYNIPKNASTKVELKGMSDLKGNNHQDQKLYFYFSSPGKDQIIYKESLTYNKISEH

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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