PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN001061000
• symbol^?: —
• synonym:
• description^?: tandem-type lipoprotein

  descriptions from strain specific annotations:

  • tandem-type lipoprotein
  • staphylococcal lipoprotein
  • tandem lipoprotein
  • lipoprotein
  • Membrane lipoprotein
  • putative lipoprotein
  • putative staphylococcal lipoprotein
  • staphylococcus tandem lipoproteins family protein
• strand^?: -
• coordinates^?: 1338346..1339119
• synteny block^?: BlockID0005830
• occurrence^?: in 76% of 33 strains

⊟Orthologs

COL:
SACOL0189
N315:
SA0203
NCTC8325:
SAOUHSC_00172
Newman:
NWMN_0148
USA300_FPR3757:
SAUSA300_0205
04-02981:
SA2981_0211
08BA02176:
C248_0194
11819-97:
MS7_0196
6850:
RSAU_000154
71193:
ST398NM01_0220
ECT-R 2:
ECTR2_171
ED133:
—
ED98:
SAAV_0176
HO 5096 0412:
SAEMRSA15_01690
JH1:
SaurJH1_0201
JH9:
SaurJH9_0195
JKD6008:
—
JKD6159:
SAA6159_00185
LGA251:
—
M013:
M013TW_0190
MRSA252:
—
MSHR1132:
SAMSHR1132_01760
MSSA476:
SAS0186
Mu3:
SAHV_0209
Mu50:
SAV0210
MW2:
MW0186
RF122:
—
ST398:
SAPIG0220
T0131:
—
TCH60:
—
TW20:
—
USA300_TCH1516:
USA300HOU_0217
VC40:
SAVC_00790

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKAHKIFWLNLAAIIIISIVVSGDMFLAMKWEQIHLKDGLKKVLSTYPIKNLETLYEIDG
  N315            MKAHKIFWLNLAAIIIISIVVSGGMFLAMKWEQIHLKDGLKKVLSTYPIKNLETLYEIDG
  NCTC8325        MKAHKIFWLNLAAIIIISIVVSGDMFLAMKWEQIHLKDGLKKVLSTYPIKNLETLYEIDG
  Newman          MKAHKIFWLNLAAIIIISIVVSGDMFLAMKWEQIHLKDGLKKVLSTYPIKNLETLYEIDG
  USA300_FPR3757  MKAHKIFWLNLAAIIIISIVVSGDMFLAMKWEQIHLKDGLKKVLSTYPIKNLETLYEIDG
                  ***********************.************************************
  
  COL             HDNPHYENNDQDTWYIESSYSVVGSDELLKEDRMLLKVDKNTHKITGEYDTTTNDKKNAT
  N315            HDNPHYENNDQDTWYIESSYSVVGSDELLKEDRMLLKVDKNTHKITGEYDTTTNDRKDAT
  NCTC8325        HDNPHYENNDQDTWYIESSYSVVGSDELLKEDRMLLKVDKNTHKITGEYDTTTNDRKNAT
  Newman          HDNPHYENNDQDTWYIESSYSVVGSDELLKEDRMLLKVDKNTHKITGEYDTTTNDKKNAT
  USA300_FPR3757  HDNPHYENNDQDTWYIESSYSVVGSDELLKEDRMLLKVDKNTHKITGEYDTTTNDKKNAT
                  *******************************************************:*:**
  
  COL             DSTYKSYPVKVVNNKIVFTKDVKDPALKQKIENNQFLIQSGDLTSILNSNDLKVTHDPTT
  N315            DSTYKSYPVKVVNNKIVFTKDVKDPALKQKIENNQFLIQSGDLTSILNSNDLKVTHDPTT
  NCTC8325        DSTYKSYPVKVVNNKIVFTKDVKDPALKQKIENNQFLIQSGDLTSILNSNDLKVTHDPTT
  Newman          DSTYKSYPVKVVNNKIVFTKDVKDPALKQKIENNQFLIQSGDLTSILNSNDLKVTHDPTT
  USA300_FPR3757  DSTYKSYPVKVVNNKIVFTKDVKDPALKQKIENNQFLIQSGDLTSILNSNDLKVTHDPTT
                  ************************************************************
  
  COL             DYYNLSGKLSNDNPNVKQLKRRYNIPKNASTKVELKGMSDLKGNNHQDQKLYFYFSSPGK
  N315            DYYNLSGKLSNDNPNVKQLKRRYNIPSNASTKVELKGMSDLKGNNHQDQKLYFYFSSPGK
  NCTC8325        DYYNLSGKLSNDNPNVKQLKRRYNIPKNASTKVELKGMSDLKGNNHQDQKLYFYFSSPGK
  Newman          DYYNLSGKLSNDNPNVKQLKRRYNIPKNASTKVELKGMSDLKGNNHQDQKLYFYFSSPGK
  USA300_FPR3757  DYYNLSGKLSNDNPNVKQLKRRYNIPKNASTKVELKGMSDLKGNNHQDQKLYFYFSSPGK
                  **************************.*********************************
  
  COL             DQIIYKESLTYNKISEH
  N315            NQIIYKESLTYNKLSEH
  NCTC8325        DQIIYKESLTYNKISEH
  Newman          DQIIYKESLTYNKISEH
  USA300_FPR3757  DQIIYKESLTYNKISEH
                  :************:***