PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 06-JUL-2013

⊟Summary

• organism: Staphylococcus aureus Newman
• locus tag: NWMN_0300 [new locus tag: NWMN_RS01710 ]
• pan locus tag^?: SAUPAN000616000
• symbol: NWMN_0300
• pan gene symbol^?: —
• synonym:
• product: hypothetical protein

⊟Additional information (user-provided)

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: NWMN_0300 [new locus tag: NWMN_RS01710 ]
• symbol: NWMN_0300
• product: hypothetical protein
• replicon: chromosome
• strand: +
• coordinates: 346283..346789
• length: 507
• essential: unknown

⊟Accession numbers

• Gene ID: 5330139 NCBI
• RefSeq: YP_001331334 NCBI
• BioCyc:
• MicrobesOnline: 3705831 MicrobesOnline

⊟Phenotype

⊟Additional information (user-provided)

⊟DNA sequence

• 1
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  481
  
  TTGACTGAATTTAATCCAATTACAACATTAAAAATTAATGACGGAGAAAAAGATTACGAA
  GTAGAAGCAAAAGTAACATTTGCATTTGACCGAAAAGCTGAAAAATTCTCAGAAGATAGC
  GAAGATGGGAGAAAAGGAGCAATGCCAGGATTCAATGTTATATTTAACGGTTTGCTAGAA
  TCTAGAAACAAAGCGATTTTACAATTTTGGGAATGTGCTACTGCTTATTTAAAAAACCCA
  CCAACTCGAGAACAATTAGAAAAAGCAATTGATGATTTCATCACTGAAAACGAGGATACT
  TTGCCGTTATTACAAGGGGCTTTGGACAAACTTAACAATAGTGGTTTTTTCAAGAGGGAG
  AGTCGCTCGTACTGGATGACATTGAACAAAGCACCGAATATGGCCAAAAGCGAGGACAAA
  GAAATGACGAAAGCAGGCATAGAAATGATGAAAGAGAATTACAAGGAAATCATGGGCGCA
  GAACCTTACACGATTACTCAAAAATAA
  60
  120
  180
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  507
  

⊟Protein

⊟General

• locus tag: NWMN_0300 [new locus tag: NWMN_RS01710 ]
• symbol: NWMN_0300
• description: hypothetical protein
• length: 168
• theoretical pI: 4.64896
• theoretical MW: 19303.7
• GRAVY: -0.758929

⊟Function

• TIGRFAM:
• TheSEED  :
  • Phage phi 11 orf40 protein homolog
• PFAM:
  Phage_TACs (CL0567) Phage_TAC_12; Phage tail assembly chaperone protein, TAC (PF12363; HMM-score: 44.2)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cytoplasmic
  • Cytoplasmic Score: 7.5
  • Cytoplasmic Membrane Score: 1.15
  • Cellwall Score: 0.62
  • Extracellular Score: 0.73
  • Internal Helices: 0
• DeepLocPro: Cytoplasmic
  • Cytoplasmic Score: 0.8949
  • Cytoplasmic Membrane Score: 0.0401
  • Cell wall & surface Score: 0.0006
  • Extracellular Score: 0.0644
• LocateP: Intracellular
  • Prediction by SwissProt Classification: Cytoplasmic
  • Pathway Prediction: No pathway
  • Intracellular possibility: 1
  • Signal peptide possibility: -1
  • N-terminally Anchored Score: 1
  • Predicted Cleavage Site: No CleavageSite
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.005988
  • TAT(Tat/SPI): 0.000371
  • LIPO(Sec/SPII): 0.000789
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 151220512 NCBI
• RefSeq: YP_001331334 NCBI
• UniProt: A0A0H3KE67 UniProt

⊟Additional information (user-provided)

⊟Protein sequence

• MTEFNPITTLKINDGEKDYEVEAKVTFAFDRKAEKFSEDSEDGRKGAMPGFNVIFNGLLESRNKAILQFWECATAYLKNPPTREQLEKAIDDFITENEDTLPLLQGALDKLNNSGFFKRESRSYWMTLNKAPNMAKSEDKEMTKAGIEMMKENYKEIMGAEPYTITQK

⊟Experimental data

• experimentally validated:
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: NWMN_0295 > NWMN_0296 > NWMN_0297 > NWMN_0298 > NWMN_0299 > NWMN_0300

⊟Regulation

• regulator:

⊟Additional information (user-provided)

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Additional information (user-provided)

⊟Other information (user-provided)

You can add further information about the gene and protein here. [edit]

⊟Literature

⊟References

⊟Relevant publications