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NCBI: 06-JUL-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1618 [new locus tag: NWMN_RS09080 ]
  • pan locus tag?: SAUPAN004384000
  • symbol: NWMN_1618
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_1618 [new locus tag: NWMN_RS09080 ]
  • symbol: NWMN_1618
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1796479..1797609
  • length: 1131
  • essential: unknown other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    GTGAAGAAAATTTTATTTGATGTTGATGGCGTTTTTTTAAGTGAAGAACGTTGTTTCGAT
    GTCTCTGCATTAACGGTATATGAATTATTAATGGATAAGTGTTATTTAGGTCTTCATTCA
    CATATAGATTGGGAAACTTTGACTGATAACGATATACAAGACATTAGGAATCGAATTTTT
    CAAAAAGATAAGATTTTAAACAAATTAAAATCGCTAGGGCTGAATTCAAATTGGGATATG
    TTATTTATCGTTTTTAGTATTCATTTAATTGATATTTTGAAAAAGTTATCACATGATGAA
    ATTGAGGCATTCATGTATCAAGATGAGCCTGTCGAATTGAAGTTGCAAAATATAAGCACA
    AACTTAGCAGACTGTTTTAATTTAAATGAACAACTACCTTTACAATTTTTGGATAATGTA
    AAAGTTGGTAAAAATAATATTTATGCTGCTTTGGAAGAGTTTGCAACAACAGAGTTACAT
    GTTTCGGATGCTACTTTATTTAGTTTGAAGGGTGCATTATGGACGTTAGCGCAAGAAGTT
    TATCAAGAATGGTATTTAGGATCGAAGTTGTATGAAGATGTTGAAAAGAAAATAGCACGA
    ACTACTTTTAAGACAGGTTATATTTATCAAGAAATTATTTTGAGACCAGTAGATGAAGTT
    AAGGTACTTCTGAATGATTTAAAAGGTGCTGGTTTCGAATTAGGTATTGCAACAGGTCGT
    CCTTATACTGAGACTGTTGTGCCATTTGAAAATTTAGGATTGTTACCATATTTTGAAGCT
    GATTTTATTGCAACAGCAAGTGATGTTTTAGAAGCAGAGAATATGTATCCGCAAGCACGA
    CCATTAGGAAAGCCGAATCCTTTTAGTTATATCGCAGCTTTATATGGTAATAATCGCGAT
    AAATATGAATCTTATAGCAATAAGCAAGATAACATTGTAAATAAAGATGACGTATTTATA
    GTAGGCGATTCGTTAGCTGACTTATTAAGTGCTCAAAAAATAGGTGCAACGTTTATTGGA
    ACATTAACAGGTTTAAAAGGTAAGGATGCTGCAGGTGAGTTAGAAGCGCATCATGCCGAC
    TATGTTATTAATCATTTAGGTGAACTTAGAGGTGTACTAGATAATTTGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1131

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: NWMN_1618 [new locus tag: NWMN_RS09080 ]
  • symbol: NWMN_1618
  • description: hypothetical protein
  • length: 376
  • theoretical pI: 4.46136
  • theoretical MW: 42632.2
  • GRAVY: -0.133511

Function[edit | edit source]

  • TIGRFAM:
    AHBA synthesis associated protein (TIGR01454; HMM-score: 30.6)
    HAD hydrolase, TIGR02253 family (TIGR02253; HMM-score: 30.3)
    Metabolism Energy metabolism Sugars phosphoglycolate phosphatase, bacterial (TIGR01449; EC 3.1.3.18; HMM-score: 24.8)
    phosphonatase-like hydrolase (TIGR03351; HMM-score: 24.7)
    and 5 more
    Unknown function Enzymes of unknown specificity HAD hydrolase, family IIA (TIGR01460; HMM-score: 23.4)
    beta-phosphoglucomutase family hydrolase (TIGR02009; HMM-score: 17.1)
    HAD hydrolase, TIGR01548 family (TIGR01548; HMM-score: 17)
    Unknown function Enzymes of unknown specificity HAD hydrolase, family IIIA (TIGR01662; HMM-score: 14)
    histidinol-phosphate phosphatase domain (TIGR01656; HMM-score: 11.7)
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    HAD (CL0137) Hydrolase_like; HAD-hyrolase-like (PF13242; HMM-score: 58.1)
    HAD_2; haloacid dehalogenase-like hydrolase (PF13419; HMM-score: 46.9)
    and 2 more
    Hydrolase; haloacid dehalogenase-like hydrolase (PF00702; HMM-score: 21.8)
    Hydrolase_3; haloacid dehalogenase-like hydrolase (PF08282; HMM-score: 13.8)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.003091
    • TAT(Tat/SPI): 0.000093
    • LIPO(Sec/SPII): 0.000608
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MKKILFDVDGVFLSEERCFDVSALTVYELLMDKCYLGLHSHIDWETLTDNDIQDIRNRIFQKDKILNKLKSLGLNSNWDMLFIVFSIHLIDILKKLSHDEIEAFMYQDEPVELKLQNISTNLADCFNLNEQLPLQFLDNVKVGKNNIYAALEEFATTELHVSDATLFSLKGALWTLAQEVYQEWYLGSKLYEDVEKKIARTTFKTGYIYQEIILRPVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLLPYFEADFIATASDVLEAENMYPQARPLGKPNPFSYIAALYGNNRDKYESYSNKQDNIVNKDDVFIVGDSLADLLSAQKIGATFIGTLTGLKGKDAAGELEAHHADYVINHLGELRGVLDNL

Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]