PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 10-JUN-2013

⊟Summary

• organism: Staphylococcus aureus USA300_FPR3757
• locus tag: SAUSA300_1671 [new locus tag: SAUSA300_RS09125 ]
• pan locus tag^?: SAUPAN004384000
• symbol: SAUSA300_1671
• pan gene symbol^?: —
• synonym:
• product: hypothetical protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SAUSA300_1671 [new locus tag: SAUSA300_RS09125 ]
• symbol: SAUSA300_1671
• product: hypothetical protein
• replicon: chromosome
• strand: -
• coordinates: 1836476..1837606
• length: 1131
• essential: unknown other strains

⊟Accession numbers

• Gene ID: 3912887 NCBI
• RefSeq: YP_494365 NCBI
• BioCyc: see SAUSA300_RS09125
• MicrobesOnline: 1293186 MicrobesOnline

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
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  1021
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  GTGAAGAAAATTTTATTTGATGTTGATGGCGTTTTTTTAAGTGAAGAACGTTGTTTCGAT
  GTCTCTGCATTAACGGTATATGAATTATTAATGGATAAGTGTTATTTAGGTCTTCATTCA
  CATATAGATTGGGAAACTTTGACTGATAACGATATACAAGACATTAGGAATCGAATTTTT
  CAAAAAGATAAGATTTTAAACAAATTAAAATCGCTAGGGCTGAATTCAAATTGGGATATG
  TTATTTATCGTTTTTAGTATTCATTTAATTGATATTTTGAAAAAGTTATCACATGATGAA
  ATTGAGGCATTCATGTATCAAGATGAGCCTGTCGAATTGAAGTTGCAAAATATAAGCACA
  AACTTAGCAGACTGTTTTAATTTAAATGAACAACTACCTTTACAATTTTTGGATAATGTA
  AAAGTTGGTAAAAATAATATTTATGCTGCTTTGGAAGAGTTTGCAACAACAGAGTTACAT
  GTTTCGGATGCTACTTTATTTAGTTTGAAGGGTGCATTATGGACGTTAGCGCAAGAAGTT
  TATCAAGAATGGTATTTAGGATCGAAGTTGTATGAAGATGTTGAAAAGAAAATAGCACGA
  ACTACTTTTAAGACAGGTTATATTTATCAAGAAATTATTTTGAGACCAGTAGATGAAGTT
  AAGGTACTTCTGAATGATTTAAAAGGTGCTGGTTTCGAATTAGGTATTGCAACAGGTCGT
  CCTTATACTGAGACTGTTGTGCCATTTGAAAATTTAGGATTGTTACCATATTTTGAAGCT
  GATTTTATTGCAACAGCAAGTGATGTTTTAGAAGCAGAGAATATGTATCCGCAAGCACGA
  CCATTAGGAAAGCCGAATCCTTTTAGTTATATCGCAGCTTTATATGGTAATAATCGCGAT
  AAATATGAATCTTATATCAATAAGCAAGATAACATTGTAAATAAAGATGACGTATTTATA
  GTAGGCGATTCGTTAGCTGACTTATTAAGTGCTCAAAAAATAGGTGCAACGTTTATTGGA
  ACATTAACAGGTTTAAAAGGTAAGGATGCTGCAGGTGAGTTAGAAGCGCATCATGCCGAC
  TATGTTATTAATCATTTAGGTGAACTTAGAGGTGTACTAGATAATTTGTAA
  60
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  1131
  

⊟Protein

⊟General

• locus tag: SAUSA300_1671 [new locus tag: SAUSA300_RS09125 ]
• symbol: SAUSA300_1671
• description: hypothetical protein
• length: 376
• theoretical pI: 4.46136
• theoretical MW: 42658.3
• GRAVY: -0.119415

⊟Function

• TIGRFAM:
  AHBA synthesis associated protein (TIGR01454; HMM-score: 30.7)
  HAD hydrolase, TIGR02253 family (TIGR02253; HMM-score: 30.3)
  Metabolism Energy metabolism Sugars phosphoglycolate phosphatase, bacterial (TIGR01449; EC 3.1.3.18; HMM-score: 24.8)
  phosphonatase-like hydrolase (TIGR03351; HMM-score: 24.7)
  and 4 more
  Unknown function Enzymes of unknown specificity HAD hydrolase, family IIA (TIGR01460; HMM-score: 23.3)
  HAD hydrolase, TIGR01548 family (TIGR01548; HMM-score: 17.2)
  beta-phosphoglucomutase family hydrolase (TIGR02009; HMM-score: 17.1)
  histidinol-phosphate phosphatase domain (TIGR01656; HMM-score: 11.9)
• TheSEED  :
  • Phosphoserine phosphatase (EC 3.1.3.3)
  Amino Acids and Derivatives Alanine, serine, and glycine Glycine and Serine Utilization  Phosphoserine phosphatase (EC 3.1.3.3)
  and 1 more
  Amino Acids and Derivatives Alanine, serine, and glycine Serine Biosynthesis  Phosphoserine phosphatase (EC 3.1.3.3)
• PFAM:
  HAD (CL0137) Hydrolase_like; HAD-hyrolase-like (PF13242; HMM-score: 58.1)
  HAD_2; haloacid dehalogenase-like hydrolase (PF13419; HMM-score: 47.1)
  and 2 more
  Hydrolase; haloacid dehalogenase-like hydrolase (PF00702; HMM-score: 22.1)
  Hydrolase_3; haloacid dehalogenase-like hydrolase (PF08282; HMM-score: 13.7)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cytoplasmic
  • Cytoplasmic Score: 7.5
  • Cytoplasmic Membrane Score: 1.15
  • Cellwall Score: 0.62
  • Extracellular Score: 0.73
  • Internal Helices: 0
• LocateP: Intracellular
  • Prediction by SwissProt Classification: Cytoplasmic
  • Pathway Prediction: No pathway
  • Intracellular possibility: 1
  • Signal peptide possibility: -1
  • N-terminally Anchored Score: 1
  • Predicted Cleavage Site: No CleavageSite
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.003091
  • TAT(Tat/SPI): 0.000093
  • LIPO(Sec/SPII): 0.000608
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 87161042 NCBI
• RefSeq: YP_494365 NCBI
• UniProt: A0A0H2XGF0 UniProt

⊟Protein sequence

• MKKILFDVDGVFLSEERCFDVSALTVYELLMDKCYLGLHSHIDWETLTDNDIQDIRNRIFQKDKILNKLKSLGLNSNWDMLFIVFSIHLIDILKKLSHDEIEAFMYQDEPVELKLQNISTNLADCFNLNEQLPLQFLDNVKVGKNNIYAALEEFATTELHVSDATLFSLKGALWTLAQEVYQEWYLGSKLYEDVEKKIARTTFKTGYIYQEIILRPVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLLPYFEADFIATASDVLEAENMYPQARPLGKPNPFSYIAALYGNNRDKYESYINKQDNIVNKDDVFIVGDSLADLLSAQKIGATFIGTLTGLKGKDAAGELEAHHADYVINHLGELRGVLDNL

⊟Experimental data

• experimentally validated: data available for COL, NCTC8325
• protein localization: data available for COL
• quantitative data / protein copy number per cell: data available for COL
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: no polycistronic organisation predicted

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications