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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_RS09080 [old locus tag: NWMN_1618 ]
- pan locus tag?: SAUPAN004384000
- symbol: NWMN_RS09080
- pan gene symbol?: —
- synonym:
- product: HAD family hydrolase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_RS09080 [old locus tag: NWMN_1618 ]
- symbol: NWMN_RS09080
- product: HAD family hydrolase
- replicon: chromosome
- strand: -
- coordinates: 1796479..1797609
- length: 1131
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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1081GTGAAGAAAATTTTATTTGATGTTGATGGCGTTTTTTTAAGTGAAGAACGTTGTTTCGAT
GTCTCTGCATTAACGGTATATGAATTATTAATGGATAAGTGTTATTTAGGTCTTCATTCA
CATATAGATTGGGAAACTTTGACTGATAACGATATACAAGACATTAGGAATCGAATTTTT
CAAAAAGATAAGATTTTAAACAAATTAAAATCGCTAGGGCTGAATTCAAATTGGGATATG
TTATTTATCGTTTTTAGTATTCATTTAATTGATATTTTGAAAAAGTTATCACATGATGAA
ATTGAGGCATTCATGTATCAAGATGAGCCTGTCGAATTGAAGTTGCAAAATATAAGCACA
AACTTAGCAGACTGTTTTAATTTAAATGAACAACTACCTTTACAATTTTTGGATAATGTA
AAAGTTGGTAAAAATAATATTTATGCTGCTTTGGAAGAGTTTGCAACAACAGAGTTACAT
GTTTCGGATGCTACTTTATTTAGTTTGAAGGGTGCATTATGGACGTTAGCGCAAGAAGTT
TATCAAGAATGGTATTTAGGATCGAAGTTGTATGAAGATGTTGAAAAGAAAATAGCACGA
ACTACTTTTAAGACAGGTTATATTTATCAAGAAATTATTTTGAGACCAGTAGATGAAGTT
AAGGTACTTCTGAATGATTTAAAAGGTGCTGGTTTCGAATTAGGTATTGCAACAGGTCGT
CCTTATACTGAGACTGTTGTGCCATTTGAAAATTTAGGATTGTTACCATATTTTGAAGCT
GATTTTATTGCAACAGCAAGTGATGTTTTAGAAGCAGAGAATATGTATCCGCAAGCACGA
CCATTAGGAAAGCCGAATCCTTTTAGTTATATCGCAGCTTTATATGGTAATAATCGCGAT
AAATATGAATCTTATAGCAATAAGCAAGATAACATTGTAAATAAAGATGACGTATTTATA
GTAGGCGATTCGTTAGCTGACTTATTAAGTGCTCAAAAAATAGGTGCAACGTTTATTGGA
ACATTAACAGGTTTAAAAGGTAAGGATGCTGCAGGTGAGTTAGAAGCGCATCATGCCGAC
TATGTTATTAATCATTTAGGTGAACTTAGAGGTGTACTAGATAATTTGTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_RS09080 [old locus tag: NWMN_1618 ]
- symbol: NWMN_RS09080
- description: HAD family hydrolase
- length: 376
- theoretical pI: 4.46136
- theoretical MW: 42632.2
- GRAVY: -0.133511
⊟Function[edit | edit source]
- TIGRFAM: AHBA synthesis associated protein (TIGR01454; HMM-score: 30.6)HAD hydrolase, TIGR02253 family (TIGR02253; HMM-score: 30.3)Energy metabolism Sugars phosphoglycolate phosphatase, bacterial (TIGR01449; EC 3.1.3.18; HMM-score: 24.8)phosphonatase-like hydrolase (TIGR03351; HMM-score: 24.7)and 5 moreUnknown function Enzymes of unknown specificity HAD hydrolase, family IIA (TIGR01460; HMM-score: 23.4)beta-phosphoglucomutase family hydrolase (TIGR02009; HMM-score: 17.1)HAD hydrolase, TIGR01548 family (TIGR01548; HMM-score: 17)Unknown function Enzymes of unknown specificity HAD hydrolase, family IIIA (TIGR01662; HMM-score: 14)histidinol-phosphate phosphatase domain (TIGR01656; HMM-score: 11.7)
- TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
- PFAM: HAD (CL0137) Hydrolase_like; HAD-hyrolase-like (PF13242; HMM-score: 58.1)HAD_2; haloacid dehalogenase-like hydrolase (PF13419; HMM-score: 46.9)and 2 moreHydrolase; haloacid dehalogenase-like hydrolase (PF00702; HMM-score: 21.8)Hydrolase_3; haloacid dehalogenase-like hydrolase (PF08282; HMM-score: 13.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.003091
- TAT(Tat/SPI): 0.000093
- LIPO(Sec/SPII): 0.000608
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKKILFDVDGVFLSEERCFDVSALTVYELLMDKCYLGLHSHIDWETLTDNDIQDIRNRIFQKDKILNKLKSLGLNSNWDMLFIVFSIHLIDILKKLSHDEIEAFMYQDEPVELKLQNISTNLADCFNLNEQLPLQFLDNVKVGKNNIYAALEEFATTELHVSDATLFSLKGALWTLAQEVYQEWYLGSKLYEDVEKKIARTTFKTGYIYQEIILRPVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLLPYFEADFIATASDVLEAENMYPQARPLGKPNPFSYIAALYGNNRDKYESYSNKQDNIVNKDDVFIVGDSLADLLSAQKIGATFIGTLTGLKGKDAAGELEAHHADYVINHLGELRGVLDNL
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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