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NCBI: 06-JUL-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_1893 [new locus tag: NWMN_RS10895 ]
- pan locus tag?: SAUPAN001375000
- symbol: NWMN_1893
- pan gene symbol?: —
- synonym:
- product: phage head-tail adaptor
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_1893 [new locus tag: NWMN_RS10895 ]
- symbol: NWMN_1893
- product: phage head-tail adaptor
- replicon: chromosome
- strand: -
- coordinates: 2108469..2108831
- length: 363
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID: 5331157 NCBI
- RefSeq: YP_001332927 NCBI
- BioCyc:
- MicrobesOnline: 3707481 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361ATGAAGAAAGTGTTTAAAAAACCTAGAATTACAACTAAACGTTTAAATACTCGTGTTCAT
TTTTATAAGTATACTGAAAATAATGGTCCAGAAGCTGGAGAAAAAGAAGAAAAATTATTA
TATAGCTGTTGGGCGAGTATTGATGGTGTCTGGTTACGTGAATTAGAACAAGCTATCTCA
AACGGAACCCAAAATGACATTAAATTGTATATTCGTGATCCGCAAGGTGATTATTTACCC
AGTGAAGAACATTATCTTGAAATTGAATCAAGATATTTCAAAAATCGTTTGAATATAAAG
CAAGTATCACCAGATTTGGATAATAAAGACTTTATTATGATTCGTGGAGGATATAGTTCA
TGA60
120
180
240
300
360
363
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_1893 [new locus tag: NWMN_RS10895 ]
- symbol: NWMN_1893
- description: phage head-tail adaptor
- length: 120
- theoretical pI: 8.9003
- theoretical MW: 14210
- GRAVY: -0.9075
⊟Function[edit | edit source]
- TIGRFAM: Mobile and extrachromosomal element functions Prophage functions putative phage head-tail adaptor (TIGR01563; HMM-score: 19.8)
- TheSEED:
- PFAM: no clan defined Phage_H_T_join; Phage head-tail joining protein (PF05521; HMM-score: 24.9)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Extracellular
- Cytoplasmic Score: 2.03
- Cytoplasmic Membrane Score: 0.06
- Cellwall Score: 0.56
- Extracellular Score: 7.34
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.016624
- TAT(Tat/SPI): 0.00037
- LIPO(Sec/SPII): 0.001298
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKKVFKKPRITTKRLNTRVHFYKYTENNGPEAGEKEEKLLYSCWASIDGVWLRELEQAISNGTQNDIKLYIRDPQGDYLPSEEHYLEIESRYFKNRLNIKQVSPDLDNKDFIMIRGGYSS
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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