PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 06-JUL-2013

⊟Summary

• organism: Staphylococcus aureus Newman
• locus tag: NWMN_1896 [new locus tag: NWMN_RS10910 ]
• pan locus tag^?: SAUPAN001371000
• symbol: NWMN_1896
• pan gene symbol^?: —
• synonym:
• product: phage major capsid protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: NWMN_1896 [new locus tag: NWMN_RS10910 ]
• symbol: NWMN_1896
• product: phage major capsid protein
• replicon: chromosome
• strand: -
• coordinates: 2109393..2110538
• length: 1146
• essential: unknown

⊟Accession numbers

• Gene ID: 5331160 NCBI
• RefSeq: YP_001332930 NCBI
• BioCyc:
• MicrobesOnline: 3707484 MicrobesOnline

⊟Phenotype

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⊟DNA sequence

• 1
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  ATGACTATAAATTTATCGGAAACATTCGCAAATGCGAAAAACGAATTTATTAATGCAGTA
  AACAACGGTGAACCGCAAGAAAGACAAAATGAATTGTACGGTGACATGATTAACCAACTA
  TTTGAAGAAACTAAATTACAAGCAAAAGCAGAAGCTGAAAGAGTTTCTAGTTTACCTAAA
  TCAGCACAATCTTTGAGTGCAAACCAAAGAAGTTTCTTCATGGATATCAATAAAAACGTT
  AACTATAAAGAAGAAAAACTTTTGCCAGAAGAAACAATTGATAGAATTTTTGAAGATTTG
  ACGACGAATCATCCGTTATTAGCTGATTTAGGTATTAAAAACGCTGGTTTGCGTTTGAAG
  TTCTTAAAATCTGAAACTTCTGGCGTAGCCGTTTGGGGTAAAATCTATGGTGAAATTAAA
  GGTCAATTAGATGCTGCGTTCAGTGAAGAAACAGCAATTCAAAATAAATTGACAGCGTTT
  GTTGTTTTACCAAAAGATTTAAATGATTTTGGTCCTGCGTGGATTGAAAGATTTGTTCGT
  GTTCAAATCGAAGAAGCATTTGCAGTGGCGCTTGAAACTGCGTTCTTAAAAGGTACTGGT
  AAAGACCAACCAATCGGCTTAAACCGTCAAGTACAAAAAGGTGTATCGGTAACTGAGGGT
  GCTTATCCAGAGAAAGAAGAACAAGGTACGCTTACATTTGCTAATCCGCGCGCTACGGTT
  AATGAATTGACGCAAGTGTTTAAATACCACTCAACTAACGAGAAAGGTAAATCAGTAGCG
  GTTAAAGGTAATGTAACAATGGTTGTTAATCCGTCCGATGCTTTTGAGGTTCAAGCACAG
  TATACACATTTAAATGCAAATGGCGTATATGTTACTGCTTTACCATTTAATTTGAATGTT
  ATCGAGTCTACAGTCCAAGAAGCAGGTAAGGTTTTAACGTACGTTAAAGGTTTATATGAT
  GGTTATTTAGCTGGTGGTATTAATGTTCAGAAATTTAAAGAAACACTTGCGTTAGATGAT
  ATGGATTTATACACTGCAAAACAATTTGCTTACGGCAAAGCGAAAGATAATAAAGTTGCT
  GCTGTTTGGAAATTAGATTTAAAAGGACATAAGCCAGCTTTAGAAGGTACCGAAGAAACA
  CTATAA
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⊟Protein

⊟General

• locus tag: NWMN_1896 [new locus tag: NWMN_RS10910 ]
• symbol: NWMN_1896
• description: phage major capsid protein
• length: 381
• theoretical pI: 5.00056
• theoretical MW: 42232.4
• GRAVY: -0.366667

⊟Function

• TIGRFAM:
  Genetic information processing Mobile and extrachromosomal element functions Prophage functions phage major capsid protein, HK97 family (TIGR01554; HMM-score: 45.8)
• TheSEED:
• PFAM:
  Phage-coat (CL0373) Phage_capsid; Phage capsid family (PF05065; HMM-score: 46.7)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: unknown (no significant prediction)
  • Cytoplasmic Score: 2.5
  • Cytoplasmic Membrane Score: 2.5
  • Cellwall Score: 2.5
  • Extracellular Score: 2.5
  • Internal Helices: 0
• LocateP: Intracellular
  • Prediction by SwissProt Classification: Cytoplasmic
  • Pathway Prediction: No pathway
  • Intracellular possibility: 1
  • Signal peptide possibility: -1
  • N-terminally Anchored Score: 1
  • Predicted Cleavage Site: No CleavageSite
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.005143
  • TAT(Tat/SPI): 0.000931
  • LIPO(Sec/SPII): 0.000902
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 151222108 NCBI
• RefSeq: YP_001332930 NCBI
• UniProt: A0A0H3KDX6 UniProt

⊟Protein sequence

• MTINLSETFANAKNEFINAVNNGEPQERQNELYGDMINQLFEETKLQAKAEAERVSSLPKSAQSLSANQRSFFMDINKNVNYKEEKLLPEETIDRIFEDLTTNHPLLADLGIKNAGLRLKFLKSETSGVAVWGKIYGEIKGQLDAAFSEETAIQNKLTAFVVLPKDLNDFGPAWIERFVRVQIEEAFAVALETAFLKGTGKDQPIGLNRQVQKGVSVTEGAYPEKEEQGTLTFANPRATVNELTQVFKYHSTNEKGKSVAVKGNVTMVVNPSDAFEVQAQYTHLNANGVYVTALPFNLNVIESTVQEAGKVLTYVKGLYDGYLAGGINVQKFKETLALDDMDLYTAKQFAYGKAKDNKVAAVWKLDLKGHKPALEGTEETL

⊟Experimental data

• experimentally validated:
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: NWMN_1890 < NWMN_1891 < NWMN_1892 < NWMN_1893 < NWMN_1894 < NWMN_1895 < NWMN_1896 < NWMN_1897 < NWMN_1898 < NWMN_1899 < NWMN_1900

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications