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NCBI: 06-JUL-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_2393 [new locus tag: NWMN_RS13780 ]
- pan locus tag?: SAUPAN006109000
- symbol: sarT
- pan gene symbol?: sarT
- synonym:
- product: accessory regulator T
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_2393 [new locus tag: NWMN_RS13780 ]
- symbol: sarT
- product: accessory regulator T
- replicon: chromosome
- strand: -
- coordinates: 2632644..2633000
- length: 357
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 5331475 NCBI
- RefSeq: YP_001333427 NCBI
- BioCyc:
- MicrobesOnline: 3707995 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301ATGAATGATTTGAAAAGCAAGAGCAATATTAAATTAATGAAAAGAGTATTAACTACATAT
GAGCTGCGTAAATATTTAAAAAAATATTTTTGTCTTACATTAGATAATTATTTAGTATTA
GCATATTTAGATGTATTTAAAAATGATGAAGGTAAATATTTTATGAGAGACATTATAAGT
TATATCGGTATAGACCAATCTAGAATTGTTAAAAGCGTAAAAGATTTATCAAAAAAGGGT
TACTTGAATAAATGTAGAGACCCACATGATAGTAGAAATGTAATCATTGTTGTTTCTGTA
AAACAACACAATTATATTAAAAATCTTTTGAGTGAAATAAATATTAATGAAACATAA60
120
180
240
300
357
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_2393 [new locus tag: NWMN_RS13780 ]
- symbol: SarT
- description: accessory regulator T
- length: 118
- theoretical pI: 9.99051
- theoretical MW: 13988.3
- GRAVY: -0.39322
⊟Function[edit | edit source]
- TIGRFAM: Regulatory functions DNA interactions staphylococcal accessory regulator family (TIGR01889; HMM-score: 116.5)
- TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
- PFAM: HTH (CL0123) HTH_27; Winged helix DNA-binding domain (PF13463; HMM-score: 28.2)MarR_2; MarR family (PF12802; HMM-score: 26.5)and 3 moreMarR; MarR family (PF01047; HMM-score: 19.5)TrmB; Sugar-specific transcriptional regulator TrmB (PF01978; HMM-score: 18.6)HTH_36; Helix-turn-helix domain (PF13730; HMM-score: 13.2)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.67
- Cytoplasmic Membrane Score: 0.01
- Cellwall Score: 0.15
- Extracellular Score: 0.17
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.001866
- TAT(Tat/SPI): 0.000164
- LIPO(Sec/SPII): 0.000514
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MNDLKSKSNIKLMKRVLTTYELRKYLKKYFCLTLDNYLVLAYLDVFKNDEGKYFMRDIISYIGIDQSRIVKSVKDLSKKGYLNKCRDPHDSRNVIIVVSVKQHNYIKNLLSEININET
⊟Experimental data[edit | edit source]
- experimentally validated: data available for NCTC8325
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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