PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN006109000
• symbol^?: sarT
• synonym:
• description^?: accessory regulator T

  descriptions from strain specific annotations:

  • accessory regulator T
  • transcriptional regulator
  • HTH-type transcriptional regulator sarT
  • accessory regulator A-like protein
  • putative staphylococcal accessory regulator
  • SarA family transcriptional regulator
  • staphylococcal accessory regulator T, SarT
  • transcriptional regulator SarT
  • Transcriptional regulator SarT (Staphylococcal accessory regulator T)
• strand^?: -
• coordinates^?: 6164213..6164569
• synteny block^?: BlockID0048440
• occurrence^?: in 70% of 33 strains

⊟Orthologs

COL:
SACOL2506 (sarT)
N315:
SA2286 (sarT)
NCTC8325:
SAOUHSC_02799
Newman:
NWMN_2393 (sarT)
USA300_FPR3757:
SAUSA300_2437 (sarT)
04-02981:
SA2981_2434 (sarT)
08BA02176:
—
11819-97:
MS7_2501 (sarT)
6850:
—
71193:
—
ECT-R 2:
ECTR2_2351
ED133:
—
ED98:
SAAV_2563 (sarT)
HO 5096 0412:
SAEMRSA15_23960
JH1:
SaurJH1_2574
JH9:
SaurJH9_2522
JKD6008:
SAA6008_02533 (sarT)
JKD6159:
SAA6159_02392 (sarT)
LGA251:
—
M013:
M013TW_2464
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS2384
Mu3:
SAHV_2482 (sarH3)
Mu50:
SAV2498 (sarH3)
MW2:
MW2417 (sarT)
RF122:
—
ST398:
—
T0131:
SAT0131_02696 (infB)
TCH60:
—
TW20:
SATW20_26180 (sarT)
USA300_TCH1516:
USA300HOU_2487 (sarT)
VC40:
SAVC_11360

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             -MNDLKSKSNIKLMKRVLTTYELRKYLKKYFCLTLDNYLVLAYLDVFKNDEGKYFMRDII
  N315            MMNDLKSKSNIKLMKRVLTTYELRKYLKKYFCLTLDNYLVLAYLDVFKNDEGKYFMRDII
  NCTC8325        -------------MKRVLTTYELRKYLKKYFCLTLDNYLVLAYLDVFKNDEGKYFMRDII
  Newman          -MNDLKSKSNIKLMKRVLTTYELRKYLKKYFCLTLDNYLVLAYLDVFKNDEGKYFMRDII
  USA300_FPR3757  -MNDLKSKSNIKLMKRVLTTYELRKYLKKYFCLTLDNYLVLAYLDVFKNDEGKYFMRDII
                               ***********************************************
  
  COL             SYIGIDQSRIVKSVKDLSKKGYLNKCRDPHDSRNVIIVVSVKQHNYIKNLLSEININET
  N315            SYIGIDQSRIVKSVKELSKKGYLNKCRDPHDSRNVIIVVSVKQHNYIKNLLSEININET
  NCTC8325        SYIGIDQSRIVKSVKDLSKKGYLNKCRDPHDSRNVIIVVSVKQHNYIKNLLSEININET
  Newman          SYIGIDQSRIVKSVKDLSKKGYLNKCRDPHDSRNVIIVVSVKQHNYIKNLLSEININET
  USA300_FPR3757  SYIGIDQSRIVKSVKDLSKKGYLNKCRDPHDSRNVIIVVSVKQHNYIKNLLSEININET
                  ***************:*******************************************