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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_RS03325 [old locus tag: NWMN_0581 ]
- pan locus tag?: SAUPAN002476000
- symbol: NWMN_RS03325
- pan gene symbol?: —
- synonym:
- product: ABC transporter substrate-binding protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_RS03325 [old locus tag: NWMN_0581 ]
- symbol: NWMN_RS03325
- product: ABC transporter substrate-binding protein
- replicon: chromosome
- strand: +
- coordinates: 662655..663482
- length: 828
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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781ATGAAAGATAATGATAAACAAGGTAGCAATGATAATGGCTCGTCTAAATCGCCGTACCAT
AGAATTGTTTCGTTAATGCCTAGTAATACTGAAATTTTATATGAATTAGGATTAGGTAAA
TACATAGTTGGTGTTTCAACGGTTGATGATTATCCAAAAGATGTGAAAAAGGGTAAGAAA
CAATTTGATGCTTTGAATCTAAATAAAGAGGAACTTTTAAAGGCAAAGCCAGATCTAATT
CTTGCGCATGAGTCGCAAAAGGCAACTGCTAATAAAGTATTGTCATCATTAGAGAAACAA
GGCATCAAAGTAGTGTATGTTAAAGATGCACAATCAATTGATGAAACTTACAACACATTT
AAGCAAATTGGGAAATTAACGCATCATGATAAGCAGGCTGAACAACTTGTTGAGGAAACT
AAAGATAATATCGATAAAGTCATAGATTCAATTCCTGCTCATCATAAAAAATCAAAAGTA
TTTATTGAGGTTTCATCAAAGCCTGAAATATATACAGCAGGGAAGCATACATTTTTTAAT
GATATGTTAGAAAAATTAGAAGCCCAAAATGTGTATAGTGACATTAATGGTTGGAACCCT
GTAACGAAGGAAAGTATTATTAAAAAGAACCCAGATATATTAATTTCGACGGAAGCTAAG
ACAAGATCAGATTATATGGATATCATCAAAAAAAGAGGTGGATTCAATAAAATTAATGCT
GTCAAGAATACACGTATTGAAGTTGTAAATGGTGATGAAGTATCAAGACCAGGTCCACGT
ATTGATGAAGGATTAAAAGAATTAAGAGATGCAATTTATAGAAAATAA60
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828
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_RS03325 [old locus tag: NWMN_0581 ]
- symbol: NWMN_RS03325
- description: ABC transporter substrate-binding protein
- length: 275
- theoretical pI: 9.40311
- theoretical MW: 31088.1
- GRAVY: -0.748364
⊟Function[edit | edit source]
- TIGRFAM: putative ABC transporter PGF-CTERM-modified substrate-binding protein (TIGR04281; HMM-score: 125.3)and 2 moreheme ABC transporter, heme-binding protein isdE (TIGR03659; HMM-score: 61.8)proposed F420-0 ABC transporter, periplasmic F420-0 binding protein (TIGR03868; HMM-score: 54.4)
- TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
- PFAM: Chelatase (CL0043) Peripla_BP_2; Periplasmic binding protein (PF01497; HMM-score: 117.6)and 5 moreHTH (CL0123) F-112; F-112 protein (PF09645; HMM-score: 17.7)no clan defined MMR1; Mitochondrial Myo2 receptor-related protein (PF08505; HMM-score: 15)Chelatase (CL0043) Oxidored_nitro; Nitrogenase component 1 type Oxidoreductase (PF00148; HMM-score: 13.8)Periplas_BP (CL0144) Peripla_BP_4; Periplasmic binding protein domain (PF13407; HMM-score: 13.4)SIS (CL0067) DUF2529; Domain of unknown function (DUF2529) (PF10740; HMM-score: 13)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.006852
- TAT(Tat/SPI): 0.000339
- LIPO(Sec/SPII): 0.000823
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKDNDKQGSNDNGSSKSPYHRIVSLMPSNTEILYELGLGKYIVGVSTVDDYPKDVKKGKKQFDALNLNKEELLKAKPDLILAHESQKATANKVLSSLEKQGIKVVYVKDAQSIDETYNTFKQIGKLTHHDKQAEQLVEETKDNIDKVIDSIPAHHKKSKVFIEVSSKPEIYTAGKHTFFNDMLEKLEAQNVYSDINGWNPVTKESIIKKNPDILISTEAKTRSDYMDIIKKRGGFNKINAVKNTRIEVVNGDEVSRPGPRIDEGLKELRDAIYRK
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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