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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS09575 [old locus tag: NWMN_1704 ]
  • pan locus tag?: SAUPAN004564000
  • symbol: NWMN_RS09575
  • pan gene symbol?: splC
  • synonym:
  • product: serine protease SplC

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS09575 [old locus tag: NWMN_1704 ]
  • symbol: NWMN_RS09575
  • product: serine protease SplC
  • replicon: chromosome
  • strand: -
  • coordinates: 1901869..1902588
  • length: 720
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_009641 (1901869..1902588) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_1704

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGAATAAAAATATAGTCATTAAAAGCATGGCAGCATTAGCCATTCTAACCTCAGTAACT
    GGAATAAATGCTGCAGTCGTTGAAGAGACACAACAAATAGCAAATGCAGAGAAGAATGTT
    ACGCAAGTTAAAGATACAAATATTTTTCCATATAATGGCGTCGTTTCATTTAAAGATGCG
    ACAGGTTTTGTAATTGGAAAAAATACAATTATCACCAATAAACATGTATCAAAAGATTAT
    AAAGTTGGCGATAGAATTACTGCCCATCCAAACGGTGACAAAGGAAATGGTGGTATATAT
    AAAATTAAAAGCATTTCTGATTATCCGGGTGATGAAGACATCTCTGTCATGAATATTGAA
    GAACAAGCAGTCGAACGTGGACCAAAAGGCTTTAATTTTAATGAAAATGTCCAAGCATTC
    AATTTTGCGAAAGATGCTAAAGTTGATGACAAAATTAAAGTTATTGGTTACCCATTACCT
    GCTCAAAATAGTTTTAAACAGTTTGAATCTACAGGAACTATAAAAAGAATCAAAGACAAT
    ATTTTAAATTTTGATGCATACATTGAACCCGGGAATTCAGGATCACCAGTTCTAAATTCT
    AACAATGAGGTCATAGGTGTGGTGTATGGCGGTATTGGAAAAATTGGTTCTGAATATAAT
    GGTGCCGTATACTTTACGCCTCAAATCAAAGATTTTATTCAAAAGCACATTGAACAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720

⊟Protein[edit | edit source]

Protein Data Bank: 2AS9

⊟General[edit | edit source]

  • locus tag: NWMN_RS09575 [old locus tag: NWMN_1704 ]
  • symbol: NWMN_RS09575
  • description: serine protease SplC
  • length: 239
  • theoretical pI: 6.81386
  • theoretical MW: 26098.2
  • GRAVY: -0.348117

⊟Function[edit | edit source]

  • reaction:
    EC 3.4.21.-?  ExPASy
  • TIGRFAM:
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides periplasmic serine peptidase DegS (TIGR02038; EC 3.4.21.-; HMM-score: 18.1)
    Signal transduction Regulatory functions Protein interactions periplasmic serine peptidase DegS (TIGR02038; EC 3.4.21.-; HMM-score: 18.1)
    Genetic information processing Protein fate Degradation of proteins, peptides, and glycopeptides peptidase Do (TIGR02037; EC 3.4.21.-; HMM-score: 15.2)
    Genetic information processing Protein fate Protein folding and stabilization peptidase Do (TIGR02037; EC 3.4.21.-; HMM-score: 15.2)
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    Peptidase_PA (CL0124) Trypsin; Trypsin (PF00089; HMM-score: 85.7)
    and 6 more
    Trypsin_2; Trypsin-like peptidase domain (PF13365; HMM-score: 53.1)
    Peptidase_S46; Peptidase S46 (PF10459; HMM-score: 19.9)
    Peptidase_S7; Peptidase S7, Flavivirus NS3 serine protease (PF00949; HMM-score: 19.4)
    DUF31; Putative peptidase (DUF31) (PF01732; HMM-score: 14.6)
    Peptidase_S32; Equine arteritis virus serine endopeptidase S32 (PF05579; HMM-score: 13.4)
    no clan defined DUF3836; Family of unknown function (DUF3836) (PF12930; HMM-score: 12.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 0.09
    • Cellwall Score: 0.18
    • Extracellular Score: 9.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: Signal peptide SP(Sec/SPI) length 36 aa
    • SP(Sec/SPI): 0.980234
    • TAT(Tat/SPI): 0.004245
    • LIPO(Sec/SPII): 0.00665
    • Cleavage Site: CS pos: 36-37. ANA-EK. Pr: 0.5178
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNKNIVIKSMAALAILTSVTGINAAVVEETQQIANAEKNVTQVKDTNIFPYNGVVSFKDATGFVIGKNTIITNKHVSKDYKVGDRITAHPNGDKGNGGIYKIKSISDYPGDEDISVMNIEEQAVERGPKGFNFNENVQAFNFAKDAKVDDKIKVIGYPLPAQNSFKQFESTGTIKRIKDNILNFDAYIEPGNSGSPVLNSNNEVIGVVYGGIGKIGSEYNGAVYFTPQIKDFIQKHIEQ

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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