PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary

• organism: Staphylococcus aureus Newman
• locus tag: NWMN_RS12150 [old locus tag: NWMN_2100 ]
• pan locus tag^?: SAUPAN005594000
• symbol: NWMN_RS12150
• pan gene symbol^?: lacR
• synonym:
• product: DeoR/GlpR transcriptional regulator

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: NWMN_RS12150 [old locus tag: NWMN_2100 ]
• symbol: NWMN_RS12150
• product: DeoR/GlpR transcriptional regulator
• replicon: chromosome
• strand: -
• coordinates: 2337623..2338414
• length: 792
• essential: unknown other strains

⊟Accession numbers

• Location: NC_009641 (2337623..2338414) NCBI
• BioCyc:
• MicrobesOnline: see NWMN_2100

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
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  ATGACCCATCGCCTAAATAAAGGAGGCAATTTTACATTGAATAAACATGAACGTTTGGAC
  GAAATTGCTAAACTAGTGAATAAAAAGGGCACGATAAGAACGAATGAAATCGTCGAAGGT
  TTAAATGTGTCTGATATGACAGTTCGAAGAGATTTAATTGAATTGGAAAATAAAGGGATT
  TTAACGAAGATTCATGGTGGTGCACGCAGTAATTCAACATTTCAGTATAAAGAAATATCG
  CATAAAGAAAAACATACCCGTCAAATTGCAGAAAAACGATTTATAGCTAAAAAAGCTGCA
  TCATTAATTGAAGATGGGGATACTTTGTTTTTCGGACCAGGAACAACAGTGGAACTATTA
  GCAGAAGAAGTCAATCATCATACGCTCACAATTATTACGAATTGTTTGCCGGTGTATAAA
  ATTTTGTTAGAAAAACAAACAGCACATTTTCGTGTCTATTTAATTGGTGGTGAAATGCGC
  CATATTACAGAAGCATTTGTAGGTGAAATGGCGAACGCCATGTTGGAAAAACTAAGATTT
  AGCAAGATGTTCTTTAGTAGTAACGCAGTAAATAAAGGTGCTGTGATGACATCTACATTA
  GATGAAGCCTATACGCAACAACTGGCACTAAGTAATTCAATTGAAAAATACTTGTTAATC
  GATCATACGAAAGTTGGCAAAGAAGATTTTACATCATTTTGTCAGTTAAACGAATTGACT
  GCAGTGGTCATGGACTATGAAGATGAAGAAAAAGTAGAAACGATTAAAACATATATTGAA
  GTAGTCGACTAA
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⊟Protein

⊟General

• locus tag: NWMN_RS12150 [old locus tag: NWMN_2100 ]
• symbol: NWMN_RS12150
• description: DeoR/GlpR transcriptional regulator
• length: 263
• theoretical pI: 6.68378
• theoretical MW: 29888.1
• GRAVY: -0.319772

⊟Function

• TIGRFAM:
  Signal transduction Regulatory functions DNA interactions CRISPR locus-related DNA-binding protein (TIGR01884; HMM-score: 24.6)
  and 5 more
  Metabolism Energy metabolism Amino acids and amines histidine utilization repressor (TIGR02018; HMM-score: 15.7)
  Signal transduction Regulatory functions DNA interactions histidine utilization repressor (TIGR02018; HMM-score: 15.7)
  Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other iron-sulfur cluster biosynthesis transcriptional regulator SufR (TIGR02702; HMM-score: 14.6)
  Signal transduction Regulatory functions DNA interactions iron-sulfur cluster biosynthesis transcriptional regulator SufR (TIGR02702; HMM-score: 14.6)
  Signal transduction Regulatory functions DNA interactions staphylococcal accessory regulator family (TIGR01889; HMM-score: 12.1)
• TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
• PFAM:
  ISOCOT_Fold (CL0246) DeoRC; DeoR C terminal sensor domain (PF00455; HMM-score: 162.1)
  and 10 more
  HTH (CL0123) HTH_DeoR; DeoR-like helix-turn-helix domain (PF08220; HMM-score: 81)
  HTH_11; HTH domain (PF08279; HMM-score: 27.4)
  GntR; Bacterial regulatory proteins, gntR family (PF00392; HMM-score: 21.2)
  FaeA; FaeA-like protein (PF04703; HMM-score: 17.5)
  TrmB; Sugar-specific transcriptional regulator TrmB (PF01978; HMM-score: 16.1)
  Fe_dep_repress; Iron dependent repressor, N-terminal DNA binding domain (PF01325; HMM-score: 15.1)
  Penicillinase_R; Penicillinase repressor (PF03965; HMM-score: 13.8)
  PaaX; PaaX-like protein (PF07848; HMM-score: 13.1)
  ISOCOT_Fold (CL0246) CoA_trans; Coenzyme A transferase (PF01144; HMM-score: 12.6)
  HTH (CL0123) Rrf2; Transcriptional regulator (PF02082; HMM-score: 12.5)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:
• genes regulated by LacR, TF important in Lactose utilization: in N315

⊟Localization

• PSORTb: Cytoplasmic
  • Cytoplasmic Score: 7.5
  • Cytoplasmic Membrane Score: 1.15
  • Cellwall Score: 0.62
  • Extracellular Score: 0.73
  • Internal Helices: 0
• LocateP:
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.031751
  • TAT(Tat/SPI): 0.000485
  • LIPO(Sec/SPII): 0.000351
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: see NWMN_2100
• RefSeq: WP_001793365 NCBI
• UniProt: see NWMN_2100

⊟Protein sequence

• MTHRLNKGGNFTLNKHERLDEIAKLVNKKGTIRTNEIVEGLNVSDMTVRRDLIELENKGILTKIHGGARSNSTFQYKEISHKEKHTRQIAEKRFIAKKAASLIEDGDTLFFGPGTTVELLAEEVNHHTLTIITNCLPVYKILLEKQTAHFRVYLIGGEMRHITEAFVGEMANAMLEKLRFSKMFFSSNAVNKGAVMTSTLDEAYTQQLALSNSIEKYLLIDHTKVGKEDFTSFCQLNELTAVVMDYEDEEKVETIKTYIEVVD

⊟Experimental data

• experimentally validated: data available for COL, NCTC8325
• protein localization: data available for COL
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications