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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus Newman
- locus tag: NWMN_RS13280 [old locus tag: NWMN_2309 ]
- pan locus tag?: SAUPAN005944000
- symbol: NWMN_RS13280
- pan gene symbol?: —
- synonym:
- product: cystatin-like fold lipoprotein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NWMN_RS13280 [old locus tag: NWMN_2309 ]
- symbol: NWMN_RS13280
- product: cystatin-like fold lipoprotein
- replicon: chromosome
- strand: -
- coordinates: 2536421..2536783
- length: 363
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361TTGAAGCGATTTGTGGCGACGGTATTATTATTACTAGTCTTTATATCAGGATGTGGTAAT
GATAAATATGTGAAAGAAATAGATGAAGCAGTTAAAATTCAAAATCAAAAACAAGAACAA
CTTGCCAAAAAAGGCAACGGTGATCGTGTTGATCATTTTGAACGCAAAGATGCTAATATT
TATGTCTATGATAAGGATAAAATTATCATTTTAGCTTATAAACCTTTGAGTAATGATGAT
GAAGTGCATTATTATGCATATGATTTTAGTGATAAACGTGTATCATATAAGCAAGATTTT
GATTCGAGACGATATTATCAACAACATGATGCGGATTATCATGAAGAAAATATGACGAAC
TAG60
120
180
240
300
360
363
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NWMN_RS13280 [old locus tag: NWMN_2309 ]
- symbol: NWMN_RS13280
- description: cystatin-like fold lipoprotein
- length: 120
- theoretical pI: 6.10833
- theoretical MW: 14328.9
- GRAVY: -0.921667
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
- PFAM: NTF2 (CL0051) DUF4467; Domain of unknown function with cystatin-like fold (DUF4467) (PF14729; HMM-score: 130.9)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 9.87
- Cellwall Score: 0.12
- Extracellular Score: 0.01
- Internal Helices: 0
- LocateP:
- SignalP: Signal peptide LIPO(Sec/SPII) length 17 aa
- SP(Sec/SPI): 0.000417
- TAT(Tat/SPI): 0.000084
- LIPO(Sec/SPII): 0.999126
- Cleavage Site: CS pos: 17-18. ISG-CG. Pr: 0.9999
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MKRFVATVLLLLVFISGCGNDKYVKEIDEAVKIQNQKQEQLAKKGNGDRVDHFERKDANIYVYDKDKIIILAYKPLSNDDEVHYYAYDFSDKRVSYKQDFDSRRYYQQHDADYHEENMTN
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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