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NCBI: 26-AUG-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA0278 [new locus tag: SA_RS01625 ]
- pan locus tag?: SAUPAN001186000
- symbol: SA0278
- pan gene symbol?: esxB
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SA0278 [new locus tag: SA_RS01625 ]
- symbol: SA0278
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 337396..337710
- length: 315
- essential: no DEG other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 1123057 NCBI
- RefSeq: NP_373524 NCBI
- BioCyc: see SA_RS01625
- MicrobesOnline: 102550 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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301ATGGGTGGATATAAAGGGATTAAAGCAGATGGTGGCAAGGTGAATCAAGCGAAACAATTA
GCGGCAAAAATAGCTAAAGATATTGAAGCATGTCAAAAGCAAACGCAACAGCTCGCTGAG
TATATCGAAGGTAGTGATTGGGAAGGACAGTTCGCCAATAAGGTGAAAGATGTGTTACTT
ATTATGGCAAAGTTTCAAGAAGAATTAGTACAACCGATGGCTGACCATCAAAAAGCAATT
GATAACTTAAGTCAAAATCTAGCGAAATACGATACATTATCAATTAAGCAAGGACTTGAT
AGGGTGAACCCATGA60
120
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315
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA0278 [new locus tag: SA_RS01625 ]
- symbol: SA0278
- description: hypothetical protein
- length: 104
- theoretical pI: 7.35157
- theoretical MW: 11521.1
- GRAVY: -0.575
⊟Function[edit | edit source]
- TIGRFAM: WXG100 family type VII secretion target (TIGR03930; HMM-score: 18.2)and 1 moreDNA metabolism Degradation of DNA exodeoxyribonuclease VII, large subunit (TIGR00237; EC 3.1.11.6; HMM-score: 14.4)
- TheSEED :
- 10 kDa culture filtrate antigen CFP-10 (EsxB)
- PFAM: EsxAB (CL0352) WXG100; Proteins of 100 residues with WXG (PF06013; HMM-score: 48.9)and 10 moreP-loop_NTPase (CL0023) ADDB_N; ADDB, N-terminal (PF21445; HMM-score: 22.6)no clan defined Baculo_PEP_C; Baculovirus polyhedron envelope protein, PEP, C terminus (PF04513; HMM-score: 16.9)DUF4298; Domain of unknown function (DUF4298) (PF14131; HMM-score: 16.4)DivIVA; DivIVA protein (PF05103; HMM-score: 15.9)Alpha_Helical; Alpha helical domain (PF18489; HMM-score: 13.3)KNOX2; KNOX2 domain (PF03791; HMM-score: 13.2)RecG_N; RecG N-terminal helical domain (PF17190; HMM-score: 13.1)FlaX; FlaX (PF24151; HMM-score: 13.1)6PGD_C (CL0106) PDH_C; Prephenate dehydrogenase, dimerization domain (PF20463; HMM-score: 12.4)no clan defined Nsp1_C; Nsp1-like C-terminal region (PF05064; HMM-score: 11.2)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Extracellular
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0
- Extracellular Score: 10
- Internal Helices: 0
- DeepLocPro: Extracellular
- Cytoplasmic Score: 0.0006
- Cytoplasmic Membrane Score: 0.0016
- Cell wall & surface Score: 0.0001
- Extracellular Score: 0.9977
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.008968
- TAT(Tat/SPI): 0.000341
- LIPO(Sec/SPII): 0.029163
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MGGYKGIKADGGKVNQAKQLAAKIAKDIEACQKQTQQLAEYIEGSDWEGQFANKVKDVLLIMAKFQEELVQPMADHQKAIDNLSQNLAKYDTLSIKQGLDRVNP
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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