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NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0871 [new locus tag: SA_RS04925 ]
  • pan locus tag?: SAUPAN003187000
  • symbol: SA0871
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA0871 [new locus tag: SA_RS04925 ]
  • symbol: SA0871
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 986491..987996
  • length: 1506
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    TTGCTAATTACTGGTGTGCTATTTACATTGCGTATGCGATTTTTTCAAGTTAGACATTTT
    AAAGAAATGATTCGATTAATGTTTCAAGGAGAGAAGTCTCCTAATGGTATTTCAAGTTTT
    CAAGCGATAGCCATGTCTTTAGCAGGCAGGGTTGGTACAGGTAATATTGTCGGTGTATCT
    ACTGCAATATTTATAGGAGGACCTGGTGCAGTATTTTGGATGTGGATTACTGCGTTTTTA
    GGTGCAAGTAGTGCTTTTATTGAATCTACACTTGGTCAAATATTCAAGAGAGTTGAAAAT
    AATGAATACCGTGGTGGACCAGCGTATTATATTGAATATGGTATTGGTGGTAAATTTGGT
    AAAATTTACGGAATTATCTTTGCTATTGTTACGATTATCTCAGTAGGTCTATTGCTTCCT
    GGTGTGCAATCTAACGCTATAGCAAGTTCTATGCATAATGCGATTCATGTTCCACAATGG
    TTAATGGGTGCTATTGTTGTAGTTATTTTGGGATTAATTATTTTTGGTGGTGTACGTAGT
    ATTGCCAATGTTGCAACAGCCGTTGTACCATTTATGGCAATTATTTACATACTGATGGCT
    GTCATTATCATTTGTATCAATATACAAGAAGTGCCAGCGTTATTTGCATTAATTTTCAAA
    TCAGCATTTGGATTACAATCTGCTTTTGGTGGTATCGTTGGCGCAATGATAGAGATTGGT
    GTTAAACGTGGATTATACTCAAATGAGGCTGGTCAAGGTACAGGTCCACACGCAGCAGCG
    GCAGCAGAAGTATCACATCCAAGTAAACAAGGTCTAGTACAAGCATTTTCAGTTTATATT
    GATACATTATTTGTATGTACTGCAACTGCTCTGATTATACTTATTTCTGGTACATATAAT
    GTGACTGATGGTACGGTTAATGCGAATGGCACACCGCATTTAATTAAAGATGGCGGTATT
    TATGTTGAAAATGCAACAGGTAAAGATTATTCAGGTACTGCGATGTATGCACAAGCCGGC
    ATTGATAAAGCGTTCCATGGCAGTGGTTATCAATTTGATCCTACTTTCTCTGGCGTAGGT
    TCGTACTTTATTGCATTTGCTTTATTCTTCTTTGCATTTACTACAATTTTGTCGTACTAC
    TACATTACAGAAACAAATGTTGCTTATTTAACGCGTAATCAAAATAATCAAGTTTCATCG
    ATATTTATTAATATTGCTCGTGTGATTATTTTGTTCGCTACATTTTACGGTGCAGTTAAA
    ACAGCTGATGTAGCATGGGCATTCGGTGATTTAGGTGTAGGTCTAATGGCTTGGTTAAAT
    ATCATTGCGATTTGGATTTTACATAAGCCTGCCGTAAATGCTTTAAAAGATTATGAAATT
    CAAAAGAAACGTTTAGGAAACGGTTATAATGCAGTTTATCAACCTGATCCGAATAAATTA
    CCTAATGCTGTCTTTTGGTTGAAGACATATCCAGAACGTTTAAAACAAGCACGTGCCAAA
    AAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1506

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA0871 [new locus tag: SA_RS04925 ]
  • symbol: SA0871
  • description: hypothetical protein
  • length: 501
  • theoretical pI: 9.70551
  • theoretical MW: 54215.9
  • GRAVY: 0.523753

⊟Function[edit | edit source]

  • TIGRFAM:
    amino acid carrier protein (TIGR00835; HMM-score: 462.2)
  • TheSEED  :
    • Putative sodium/proton-dependent alanine carrier protein YrbD
  • PFAM:
    APC (CL0062) Na_Ala_symp; Sodium:alanine symporter family (PF01235; HMM-score: 502.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 8
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.01984
    • TAT(Tat/SPI): 0.001491
    • LIPO(Sec/SPII): 0.002251
  • predicted transmembrane helices (TMHMM): 9

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MLITGVLFTLRMRFFQVRHFKEMIRLMFQGEKSPNGISSFQAIAMSLAGRVGTGNIVGVSTAIFIGGPGAVFWMWITAFLGASSAFIESTLGQIFKRVENNEYRGGPAYYIEYGIGGKFGKIYGIIFAIVTIISVGLLLPGVQSNAIASSMHNAIHVPQWLMGAIVVVILGLIIFGGVRSIANVATAVVPFMAIIYILMAVIIICINIQEVPALFALIFKSAFGLQSAFGGIVGAMIEIGVKRGLYSNEAGQGTGPHAAAAAEVSHPSKQGLVQAFSVYIDTLFVCTATALIILISGTYNVTDGTVNANGTPHLIKDGGIYVENATGKDYSGTAMYAQAGIDKAFHGSGYQFDPTFSGVGSYFIAFALFFFAFTTILSYYYITETNVAYLTRNQNNQVSSIFINIARVIILFATFYGAVKTADVAWAFGDLGVGLMAWLNIIAIWILHKPAVNALKDYEIQKKRLGNGYNAVYQPDPNKLPNAVFWLKTYPERLKQARAKK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: CodY (repression) regulon
    CodY(TF)important in Amino acid metabolism; RegPrecise 

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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