From AureoWiki
Jump to navigation Jump to search

NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA0943 [new locus tag: SA_RS05345 ]
  • pan locus tag?: SAUPAN003316000
  • symbol: SA0943
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA0943 [new locus tag: SA_RS05345 ]
  • symbol: SA0943
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1070045..1070671
  • length: 627
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    ATGAAATTTGGAAAAACAATCGCAGTAGTATTAGCATCTAGTGTCTTGCTTGCAGGATGT
    ACTACGGATAAAAAAGAAATTAAGGCATATTTAAAGCAAGTGGATAAAATTAAAGACGAT
    GAAGAACCAATTAAAACTGTTGGTAAGAAAATTGCTGAATTAGATGAGAAAAAGAAAAAA
    TTAACTGAAGATGTCAATAGTAAAGATACAGCAGTTCGCGGTAAAGCAGTAAAAGATTTA
    ATTAAAAATGCCGATGATCGTCTAAAGGAATTTGAAAAAGAAGAAGACGCAATTAAGAAG
    TCTGAACAAGACTTTAAGAAAGCAAAAAGTCACGTTGATAACATTGATAATGATGTTAAA
    CGTAAAGAAGTAAAACAATTAGATGATGTATTAAAAGAAAAATACAAATTGCATGGTGAA
    TACGCGAAAGCATATAAAAAGGCTGTAAACTCAGAGAAAACATTATTTAAATATTTAAAT
    CAAAATGACGCGACACAACAAGGTGTTAACGAAAAATCAAAAGCAATAGAACAGAACTAT
    AAAAAGTTAAAAGAAGTATCAGATAAGTATACGAAAGTACTAAATAAGGTTGGTAAAGAA
    AAGCAAGACGTTGATCAATTTAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    627

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA0943 [new locus tag: SA_RS05345 ]
  • symbol: SA0943
  • description: hypothetical protein
  • length: 208
  • theoretical pI: 9.96393
  • theoretical MW: 23859.2
  • GRAVY: -1.06394

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Cell division chromosome segregation protein SMC (TIGR02169; HMM-score: 14.9)
    Genetic information processing DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02169; HMM-score: 14.9)
    type VII secretion effector, TIGR04197 family (TIGR04197; HMM-score: 12.8)
    and 6 more
    Cellular processes Cellular processes Biosynthesis of natural products NHLM bacteriocin system secretion protein (TIGR03794; HMM-score: 8.4)
    Metabolism Transport and binding proteins Amino acids, peptides and amines NHLM bacteriocin system secretion protein (TIGR03794; HMM-score: 8.4)
    SH3 domain protein (TIGR04211; HMM-score: 8.2)
    two transmembrane protein (TIGR04527; HMM-score: 8.1)
    Genetic information processing Mobile and extrachromosomal element functions Plasmid functions conjugative transfer region lipoprotein, TIGR03751 family (TIGR03751; HMM-score: 6.3)
    phage lysis regulatory protein, LysB family (TIGR03495; HMM-score: 5)
  • TheSEED  :
    • FIG01108153: hypothetical protein
  • PFAM:
    no clan defined YkyA; Putative cell-wall binding lipoprotein (PF10368; HMM-score: 171.4)
    and 16 more
    Mce4_CUP1; Cholesterol uptake porter CUP1 of Mce4, putative (PF11887; HMM-score: 18.8)
    BORCS7; BLOC-1-related complex sub-unit 7 (PF16088; HMM-score: 13.1)
    BLOC1_2; Biogenesis of lysosome-related organelles complex-1 subunit 2 (PF10046; HMM-score: 12.1)
    TerB (CL0414) TerB; Tellurite resistance protein TerB (PF05099; HMM-score: 12)
    no clan defined EzrA; Septation ring formation regulator, EzrA (PF06160; HMM-score: 11.8)
    BCLiA (CL0551) APG6; Autophagy protein Apg6 (PF04111; HMM-score: 11.7)
    no clan defined DASH_Duo1; DASH complex subunit Duo1 (PF08651; HMM-score: 10.4)
    DUF3452; Domain of unknown function (DUF3452) (PF11934; HMM-score: 10.4)
    T3SSipB; Type III cell invasion protein SipB (PF16535; HMM-score: 10.4)
    DUF948; Bacterial protein of unknown function (DUF948) (PF06103; HMM-score: 9.9)
    IL31; Interleukin 31 (PF15209; HMM-score: 9.6)
    P-loop_NTPase (CL0023) AAA_13; AAA domain (PF13166; HMM-score: 8.8)
    Golgi-transport (CL0145) BAR_3; BAR domain of APPL family (PF16746; HMM-score: 7.6)
    no clan defined IncA; IncA protein (PF04156; HMM-score: 7)
    V_ATPase_I; V-type ATPase 116kDa subunit family (PF01496; HMM-score: 6.5)
    Med4; Vitamin-D-receptor interacting Mediator subunit 4 (PF10018; HMM-score: 6.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 3.33
    • Cellwall Score: 3.33
    • Extracellular Score: 3.33
    • Internal Helices: 0
  • LocateP: Lipid anchored
    • Prediction by SwissProt Classification: Extracellular
    • Pathway Prediction: Sec-(SPII)
    • Intracellular possibility: 0
    • Signal peptide possibility: 0.5
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: VLLAGCT
  • SignalP: Signal peptide LIPO(Sec/SPII) length 19 aa
    • SP(Sec/SPI): 0.000447
    • TAT(Tat/SPI): 0.000065
    • LIPO(Sec/SPII): 0.999242
    • Cleavage Site: CS pos: 19-20. LAG-CT. Pr: 0.9999
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKFGKTIAVVLASSVLLAGCTTDKKEIKAYLKQVDKIKDDEEPIKTVGKKIAELDEKKKKLTEDVNSKDTAVRGKAVKDLIKNADDRLKEFEKEEDAIKKSEQDFKKAKSHVDNIDNDVKRKEVKQLDDVLKEKYKLHGEYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKVGKEKQDVDQFK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SA0943&oldid=93586"