From AureoWiki
Jump to navigation Jump to search

NCBI: 26-AUG-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1592 [new locus tag: SA_RS08970 ]
  • pan locus tag?: SAUPAN004464000
  • symbol: SA1592
  • pan gene symbol?: arsB
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA1592 [new locus tag: SA_RS08970 ]
  • symbol: SA1592
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1831138..1832430
  • length: 1293
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    ATGATGACAACTTTAGCGACACTCATTTTTCTAGTAACTTTATTATTTGTATTATGGCAA
    CCTAAAGGCCTAGATATTGGCATTACCGCATTAACTGGTGCCTTTATTGCTGTTATTACT
    GGTGTTGTAAGTTTTTCCGATGTTTTCGAAGTAACAGGTATTGTTTGGAATGCTACTTTG
    ACTTTTGTCTCAGTCATTCTTATTTCATTAATATTAGATAAAGTTGGATTATTCGAATGG
    TCAGCTATTCACATGCTTCATGCTTCAAAAGGAAATGGTTTAAAAATGTTCGTTTATATC
    ATATTATTGGGTGCCATTGTTGCTGCATTTTTCGCAAATGATGGCGCAGCGTTAATCTTA
    ACGCCTATTGTATTAGCGATGGTTAAAAATATAGGTTTTAGTAAGCGGGCCATATTCCCT
    TTTATTATTGCGAGTGGTTTTATAGCTGACACAACTTCTTTACCTTTGATCGTGAGCAAT
    CTAGTGAATATTATATCTGCTGATTATTTTCATGTAGGATTCGTTCGATATTTTAGTAGA
    ATGATTATACCTAATTTATTCTCGCTTTTAGCAAGTATTATAGTATTGTGGTTATATTTT
    AGAAAGGCGATACCTAAAACGTTTGATGATAATAATATAAAGCATCCTAAAGATGCCATT
    AATGATTTAAAGCTATTTAAAATTTCATGGATTGTTCTAGTTATATTACTTTTCGGCTAT
    CTAATCAGTGAATTTACTAAAATTCCGGTATCAATTTTCACTGGAATCATTGCTTTTATT
    TTTCTAATGTTGGCTCGTAAATCAAATGCTGTAAATATTAAGCAAGTCATTAAGGGCGCA
    CCTTGGAATATAGTATTATTTTCAATTGGTATGTATATCGTCGTATTCGGCTTAAGAAAT
    GCTGGCATTACTTTAATATTGGCTAAAATATTAGAATATATTTCCAATTACGGTCTATTT
    AGCACCATTTTGGGAATGGGCTTCATTTCAGCGTTTTTATCATCAATAATGAATAATATG
    CCTACAGTTTTAATAGATGCGATTGCTATTGGTCAATCAAATGTCCATGGCATGTTAAAA
    GAAGGCCTAATTTATGCGAATGTTATCGGTTCTGATTTAGGTCCAAAAATTACACCGATA
    GGCTCTTTAGCTACATTACTGTGGTTACACGTCTTAACACAAAAAGATGTTAAGATTTCT
    TGGGGCACATACTTTAAAACTGGTATCATCATTACAATTCCAGTACTATTTATAACCCTC
    ATAGGGTTGTATCTAACACTTATCATATTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1293

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA1592 [new locus tag: SA_RS08970 ]
  • symbol: SA1592
  • description: hypothetical protein
  • length: 430
  • theoretical pI: 10.0887
  • theoretical MW: 47271.7
  • GRAVY: 1.09023

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Detoxification arsenite/antimonite efflux pump membrane protein (TIGR00935; HMM-score: 706.2)
    Metabolism Transport and binding proteins Other arsenite/antimonite efflux pump membrane protein (TIGR00935; HMM-score: 706.2)
  • TheSEED  :
    • Arsenite/antimonite:H+ antiporter ArsB (EC 7.3.2.7)
    Virulence, Disease and Defense Resistance to antibiotics and toxic compounds Arsenic resistance  Arsenic efflux pump protein
  • PFAM:
    IT (CL0182) ArsB; Arsenical pump membrane protein (PF02040; HMM-score: 629.2)
    and 1 more
    CitMHS; Citrate transporter (PF03600; HMM-score: 90.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 12
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0
    • Signal peptide possibility: 0
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.045146
    • TAT(Tat/SPI): 0.000324
    • LIPO(Sec/SPII): 0.012363
  • predicted transmembrane helices (TMHMM): 11

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MMTTLATLIFLVTLLFVLWQPKGLDIGITALTGAFIAVITGVVSFSDVFEVTGIVWNATLTFVSVILISLILDKVGLFEWSAIHMLHASKGNGLKMFVYIILLGAIVAAFFANDGAALILTPIVLAMVKNIGFSKRAIFPFIIASGFIADTTSLPLIVSNLVNIISADYFHVGFVRYFSRMIIPNLFSLLASIIVLWLYFRKAIPKTFDDNNIKHPKDAINDLKLFKISWIVLVILLFGYLISEFTKIPVSIFTGIIAFIFLMLARKSNAVNIKQVIKGAPWNIVLFSIGMYIVVFGLRNAGITLILAKILEYISNYGLFSTILGMGFISAFLSSIMNNMPTVLIDAIAIGQSNVHGMLKEGLIYANVIGSDLGPKITPIGSLATLLWLHVLTQKDVKISWGTYFKTGIIITIPVLFITLIGLYLTLIIF

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: ArsR* (repression) regulon
    ArsR*(TF)important in Arsenic resistance; RegPrecise 

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SA1592&oldid=67373"