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NCBI: 26-AUG-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA1598 [new locus tag: SA_RS09000 ]
  • pan locus tag?: SAUPAN004476000
  • symbol: SA1598
  • pan gene symbol?: spdA
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SA1598 [new locus tag: SA_RS09000 ]
  • symbol: SA1598
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1835822..1836457
  • length: 636
  • essential: no DEG other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    ATGCAAAAATTCAAAGACTTTTTTTACGATGATTTATCGGTTACACGAGGAAATTATTTT
    TTAACTTTAATGGCAGCATTTTTTATTACTATCATTTTATTTATCGGCATAGTTGTCAGT
    GAAGTACATTTACTTTATAGCATGCTAATTGTATTAGTAGGTTTAATTCTATTGAGGCTA
    TTCAAAATCAATTTATTCTCTTTTAAAAAATTAACATTGTCTCAAGTTATTTATATTATA
    GGCGGTGCACTATTAATTTATGGGTTAGATAATCTTTATTTATATTTTCATGACGTACCG
    GCAAATGAACTACAATTAGAGCAAGAAATACGAAATACACCATTCTATATTTCTATTTTC
    ACTGTTACCATCATCCCCGCTATTGTGGAAGAAATTGTTTTTCGCGGTATGATAATAAGG
    GTTATATTCAGAAAACACTTATTTTTAGGGTTACTTGTGTCTAGTTTAGTTTTTGCATCA
    TTACACGAATCTGACACTTGGATTGGTTATTTACCTTACTTATATTCTGGTTTGATTTTT
    GGTCTAATTTATATAAAAACAAAACGATTAGAAGTGGTAATATTCATGCACTTCTTAAAT
    AACTTGTTAGCTCTGCTCTTTATAATATGGGGATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    636

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SA1598 [new locus tag: SA_RS09000 ]
  • symbol: SA1598
  • description: hypothetical protein
  • length: 211
  • theoretical pI: 8.67223
  • theoretical MW: 24540.4
  • GRAVY: 1.00995

Function[edit | edit source]

  • TIGRFAM:
    exosortase E/protease, VPEID-CTERM system (TIGR04162; EC 3.4.22.-; HMM-score: 30.4)
    and 1 more
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides CAAX prenyl protease-related protein (TIGR03008; HMM-score: 23.7)
  • TheSEED  :
    • Bacteriocin-processing protease, CAAX family
  • PFAM:
    Peptidase_U (CL0472) Abi; CAAX protease self-immunity (PF02517; HMM-score: 56)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 7
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -0.5
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.000803
    • TAT(Tat/SPI): 0.000091
    • LIPO(Sec/SPII): 0.004185
  • predicted transmembrane helices (TMHMM): 7

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MQKFKDFFYDDLSVTRGNYFLTLMAAFFITIILFIGIVVSEVHLLYSMLIVLVGLILLRLFKINLFSFKKLTLSQVIYIIGGALLIYGLDNLYLYFHDVPANELQLEQEIRNTPFYISIFTVTIIPAIVEEIVFRGMIIRVIFRKHLFLGLLVSSLVFASLHESDTWIGYLPYLYSGLIFGLIYIKTKRLEVVIFMHFLNNLLALLFIIWG

Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]

Matthew B Frankel, Brandon M Wojcik, Andrea C DeDent, Dominique M Missiakas, Olaf Schneewind
ABI domain-containing proteins contribute to surface protein display and cell division in Staphylococcus aureus.
Mol Microbiol: 2010, 78(1);238-52
[PubMed:20923422] [WorldCat.org] [DOI] (I p)