Jump to navigation
Jump to search
NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL1830 [new locus tag: SACOL_RS09380 ]
- pan locus tag?: SAUPAN004476000
- symbol: SACOL1830
- pan gene symbol?: spdA
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL1830 [new locus tag: SACOL_RS09380 ]
- symbol: SACOL1830
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 1884085..1884720
- length: 636
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3236002 NCBI
- RefSeq: YP_186662 NCBI
- BioCyc: see SACOL_RS09380
- MicrobesOnline: 913274 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601ATGCAAAAATTCAAAGACTTTTTTTACGATGATTTATCGGTTACACGAGGAAATTATTTT
TTAACTTTAATGGCAGCATTTTTTATTACTATCATTTTATTTATCGGCATAGTTGTCAGT
GAAGTACATTTACTTTATAGCATGCTAATTGTATTAGTAGGTTTAATTCTATTGAGGCTA
TTCAAAATCAATTTATTCTCTTTTAAAAAATTAACATTGTCTCAAGTTATTTATATTATA
GGCGGTGCACTATTAATTTATGGGTTAGATAATCTTTATTTATATTTTCATGACGTACCG
GCAAATGAACAACAATTAGAGCAAGCAATACGAAATACACCATTCTATATTTCTATTTTC
ACTGTTACCATCATCCCCGCTATTGTGGAAGAAATTGTTTTTCGCGGTATGATAATAAGG
GTTATCTTCAGAAAACACTTGTTTTTAGGGTTAATTGTGTCTAGTTTAGTTTTTGCATCA
TTACACGAATCTGACACTTGGATTGGTTATTTACCTTACTTATATTCTGGTTTGATTTTT
GGCCTAATTTATATAAAAACAAAACGATTAGAAGTTGTAATATTCATGCACTTCTTAAAT
AACTTGTTAGCTCTGCTCTTTATAATATGGAGATAA60
120
180
240
300
360
420
480
540
600
636
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL1830 [new locus tag: SACOL_RS09380 ]
- symbol: SACOL1830
- description: hypothetical protein
- length: 211
- theoretical pI: 9.36467
- theoretical MW: 24596.5
- GRAVY: 0.98436
⊟Function[edit | edit source]
- TIGRFAM: exosortase E/protease, VPEID-CTERM system (TIGR04162; EC 3.4.22.-; HMM-score: 30.4)Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides CAAX prenyl protease-related protein (TIGR03008; HMM-score: 24.9)
- TheSEED :
- CAAX amino terminal protease family
- PFAM: Peptidase_U (CL0472) Abi; CAAX protease self-immunity (PF02517; HMM-score: 56.2)and 1 moreno clan defined RAMP; Receptor activity modifying family (PF04901; HMM-score: 10)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 7
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -0.5
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.000803
- TAT(Tat/SPI): 0.000091
- LIPO(Sec/SPII): 0.004185
- predicted transmembrane helices (TMHMM): 7
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MQKFKDFFYDDLSVTRGNYFLTLMAAFFITIILFIGIVVSEVHLLYSMLIVLVGLILLRLFKINLFSFKKLTLSQVIYIIGGALLIYGLDNLYLYFHDVPANEQQLEQAIRNTPFYISIFTVTIIPAIVEEIVFRGMIIRVIFRKHLFLGLIVSSLVFASLHESDTWIGYLPYLYSGLIFGLIYIKTKRLEVVIFMHFLNNLLALLFIIWR
⊟Experimental data[edit | edit source]
- experimentally validated: data available for NCTC8325
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
⊟Relevant publications[edit | edit source]
Matthew B Frankel, Brandon M Wojcik, Andrea C DeDent, Dominique M Missiakas, Olaf Schneewind
ABI domain-containing proteins contribute to surface protein display and cell division in Staphylococcus aureus.
Mol Microbiol: 2010, 78(1);238-52
[PubMed:20923422] [WorldCat.org] [DOI] (I p)