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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL0889 [new locus tag: SACOL_RS04565 ]
- pan locus tag?: SAUPAN002844000
- symbol: SACOL0889
- pan gene symbol?: —
- synonym:
- product: pathogenicity island protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL0889 [new locus tag: SACOL_RS04565 ]
- symbol: SACOL0889
- product: pathogenicity island protein
- replicon: chromosome
- strand: -
- coordinates: 906798..907256
- length: 459
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID: 3237133 NCBI
- RefSeq: YP_185760 NCBI
- BioCyc: see SACOL_RS04565
- MicrobesOnline: 912360 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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421ATGTATTTATACGAAAAGATGGTTATTGAAAACAAAGAGATACCAATTGATGATGGGAAG
TCTTTAGGTAATTTTGAGGGTCTCTATGACAATGGAGTTATTTTAATTAATAAAAATTTA
TCCGAAAGGCGTAAAGCCGAAGTGTTATACGAAGAACTTGCCCACCACAAGTTGACGTAT
GGCAACATTTTAGACCAATCGAAGTTCAACAATCGCAAGTTCGAAAATTACGCACGTAGA
CACGGCTTTATCTCAGCAGTCCCGTTACGTGAAATTGTAGAAGCTTACAATTATGGCGTA
CGTAACTTGTATGAATTGTCTGAGTATCTACAATTAAGCGAAGAATACATATTAGAAGCA
ATAGAACAATATAAAAAGATATATGGTATTGGAACTCACTATGGCGAGTATTCTATTACA
TTTGAGCCGTTGAGAGTTTTTAAATATAAAGAAATATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL0889 [new locus tag: SACOL_RS04565 ]
- symbol: SACOL0889
- description: pathogenicity island protein
- length: 152
- theoretical pI: 5.7047
- theoretical MW: 18082.4
- GRAVY: -0.534868
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED :
- Phage protein
- PFAM: Peptidase_MA (CL0126) Peptidase_M78; IrrE N-terminal-like domain (PF06114; HMM-score: 30.3)and 2 moreno clan defined DUF4116; Domain of unknown function (DUF4116) (PF13475; HMM-score: 13.3)MMS22L_N; S-phase genomic integrity recombination mediator, N-terminal (PF14910; HMM-score: 12.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.001929
- TAT(Tat/SPI): 0.000154
- LIPO(Sec/SPII): 0.000327
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MYLYEKMVIENKEIPIDDGKSLGNFEGLYDNGVILINKNLSERRKAEVLYEELAHHKLTYGNILDQSKFNNRKFENYARRHGFISAVPLREIVEAYNYGVRNLYELSEYLQLSEEYILEAIEQYKKIYGIGTHYGEYSITFEPLRVFKYKEI
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.