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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL0982 [new locus tag: SACOL_RS05025 ]
- pan locus tag?: SAUPAN003119000
- symbol: SACOL0982
- pan gene symbol?: —
- synonym:
- product: Sua5/YciO/YrdC/YwlC family protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL0982 [new locus tag: SACOL_RS05025 ]
- symbol: SACOL0982
- product: Sua5/YciO/YrdC/YwlC family protein
- replicon: chromosome
- strand: +
- coordinates: 991023..991664
- length: 642
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3237875 NCBI
- RefSeq: YP_185850 NCBI
- BioCyc:
- MicrobesOnline: 912451 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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601ATGGAAATTTTAAATGATTCTGTAAAAAGTTTTGAAAAACTTTATTTACAATTACAAGAT
GGTTTTCCAGTGATTGTTCCTACTGATACTAATTATAATTTATGTAGTTTACCTAACAAC
GATCTTTGTATCGATAAAATATTTGAATATAAAAAGCGATCGAAAGATAAGCCATTATCA
TTATTTATTGATAAGCCAGAGGATTGGAAATTGTATGGAGATAATCAAAATACGGAAATA
GTTGATAAACTAGTTGAAATATTTTGGCCTGGACCATTAAATATTATTTTAAAAAATAAA
ACAAGCTATAATTATATGCTCAATAATTCAGATAGTATAGCTATAGGATGTGTACAAAAT
AAAACGATGAGAAGATTTATTTCATATATTAATTCACCTATAGCAATTACTTCAGCAAAT
ATATCTGGAACTGCCGATGATATTTTAATAACTGAAAATGAAGCAATTAAGCACATGGGC
GAAAATGTAAGATATATGCTAAGAAGTCAAAATAAAACTAACTATAAAACATCTAGTACG
ATTATTAAAGTGACAGATAATAAAATTGAATTATTAAGAGAAGGAGATATAAAGTTTGAA
GAAATAAAAGAAAGACTAGGTACAGGTATTATTTATGAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL0982 [new locus tag: SACOL_RS05025 ]
- symbol: SACOL0982
- description: Sua5/YciO/YrdC/YwlC family protein
- length: 213
- theoretical pI: 5.15196
- theoretical MW: 24548.9
- GRAVY: -0.41831
⊟Function[edit | edit source]
- TIGRFAM: Protein synthesis tRNA and rRNA base modification tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family (TIGR00057; HMM-score: 115.7)and 1 moreProtein fate Protein modification and repair carbamoyltransferase HypF (TIGR00143; HMM-score: 15.6)
- TheSEED: Cofactors, Vitamins, Prosthetic Groups, Pigments Tetrapyrroles Experimental tye Sua5 YciO YrdC YwlC family proteinand 6 moreRNA Metabolism RNA processing and modification t6A synthesis in bacteria TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNAtRNA modification Archaea TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNAtRNA mods Archaea TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNAYrdC-YciO TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA
- PFAM: no clan defined Sua5_yciO_yrdC; Telomere recombination (PF01300; HMM-score: 136.2)
⊟Structure, modifications & interactions[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
- protein partners:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.00926
- TAT(Tat/SPI): 0.00024
- LIPO(Sec/SPII): 0.001025
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MEILNDSVKSFEKLYLQLQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKPLSLFIDKPEDWKLYGDNQNTEIVDKLVEIFWPGPLNIILKNKTSYNYMLNNSDSIAIGCVQNKTMRRFISYINSPIAITSANISGTADDILITENEAIKHMGENVRYMLRSQNKTNYKTSSTIIKVTDNKIELLREGDIKFEEIKERLGTGIIYE
⊟Experimental data[edit | edit source]
- experimentally validated: no data available
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
⊟Relevant publications[edit | edit source]