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NCBI: 03-AUG-2016

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus NCTC8325
  • locus tag: SAOUHSC_00915
  • pan locus tag?: SAUPAN003119000
  • symbol: SAOUHSC_00915
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAOUHSC_00915
  • symbol: SAOUHSC_00915
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 887412..888053
  • length: 642
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    ATGGAAATTTTAAATGATTCTGTAAAAAGTTTTGAAAAACTTTATTTACAATTACAAGAT
    GGTTTTCCAGTGATTGTTCCTACTGATACTAATTATAATTTATGTAGTTTACCTAACAAC
    GATCTTTGTATCGATAAAATATTTGAATATAAAAAGCGATCGAAAGATAAGCCATTATCA
    TTATTTATTGATAAGCCAGAGGATTGGAAATTGTATGGAGATAATCAAAATACGGAAATA
    GTTGATAAACTAGTTGAAATATTTTGGCCTGGACCATTAAATATTATTTTAAAAAATAAA
    ACAAGCTATAATTATATGCTCAATAATTCAGATAGTATAGCTATAGGATGTGTACAAAAT
    AAAACGATGAGAAGATTTATTTCATATATTAATTCACCTATAGCAATTACTTCAGCAAAT
    ATATCTGGAACTGCCGATGATATTTTAATAACTGAAAATGAAGCAATTAAGCACATGGGC
    GAAAATGTAAGATATATGCTAAGAAGTCAAAATAAAACTAACTATAAAACATCTAGTACG
    ATTATTAAAGTGACAGATAATAAAATTGAATTATTAAGAGAAGGAGATATAAAGTTTGAA
    GAAATAAAAGAAAGACTAGGTACAGGTATTATTTATGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    642

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAOUHSC_00915
  • symbol: SAOUHSC_00915
  • description: hypothetical protein
  • length: 213
  • theoretical pI: 5.15196
  • theoretical MW: 24548.9
  • GRAVY: -0.41831

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Protein synthesis tRNA and rRNA base modification tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family (TIGR00057; HMM-score: 115.7)
    and 1 more
    Genetic information processing Protein fate Protein modification and repair carbamoyltransferase HypF (TIGR00143; HMM-score: 15.6)
  • TheSEED  :
    • Threonylcarbamoyl-AMP synthase-like protein
    RNA Metabolism RNA processing and modification tRNA modification Archaea  TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA
    and 2 more
    RNA Metabolism RNA processing and modification YrdC-YciO  TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA
    RNA Metabolism RNA processing and modification YrdC-YciO-Sua5 and associated protein families  TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA
  • PFAM:
    no clan defined Sua5_yciO_yrdC; Telomere recombination (PF01300; HMM-score: 136.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00926
    • TAT(Tat/SPI): 0.00024
    • LIPO(Sec/SPII): 0.001025
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MEILNDSVKSFEKLYLQLQDGFPVIVPTDTNYNLCSLPNNDLCIDKIFEYKKRSKDKPLSLFIDKPEDWKLYGDNQNTEIVDKLVEIFWPGPLNIILKNKTSYNYMLNNSDSIAIGCVQNKTMRRFISYINSPIAITSANISGTADDILITENEAIKHMGENVRYMLRSQNKTNYKTSSTIIKVTDNKIELLREGDIKFEEIKERLGTGIIYE

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Ulrike Mäder, Pierre Nicolas, Maren Depke, Jan Pané-Farré, Michel Debarbouille, Magdalena M van der Kooi-Pol, Cyprien Guérin, Sandra Dérozier, Aurelia Hiron, Hanne Jarmer, Aurélie Leduc, Stephan Michalik, Ewoud Reilman, Marc Schaffer, Frank Schmidt, Philippe Bessières, Philippe Noirot, Michael Hecker, Tarek Msadek, Uwe Völker, Jan Maarten van Dijl
    Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.
    PLoS Genet: 2016, 12(4);e1005962
    [PubMed:27035918] [WorldCat.org] [DOI] (I e)

⊟Relevant publications[edit | edit source]

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