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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL1502 [new locus tag: SACOL_RS07650 ]
  • pan locus tag?: SAUPAN003922000
  • symbol: SACOL1502
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL1502 [new locus tag: SACOL_RS07650 ]
  • symbol: SACOL1502
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1542837..1543412
  • length: 576
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGTCAGAGACATTCAATCAAATTAAAGAAAGTTTTATTGAATATTTACTTTTTCAATAT
    CGATTTAAGTCGCGTATTGCAGTTTGGGTGCTTAACTATATAAAAGTGAATGAGGCGAAA
    TTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCA
    GAAGTGGGAAGTCACGCTTCTGCAATTCAATTTACTAAGCGTAATATAAAGTTAATGAAT
    ACAAATGAAATATTTGATTATATCGCTAATCATAACTGTGCTTTTGATATTCAAATTCAC
    TTCGCAAACGTGTCAAAGCGTGAGCAAAGGCTAGATGATTTAATAGTTGCTCAACTAACG
    GAATCGCCCAGTTATCAAACTTATCTTCATGACTTAAATAGTATGGCTATAGATCGGCAT
    AAACATGCGTTATTAATAGATTACTTGTTACACAATATTGATTTAAGTTTACAGATGAAT
    GAAAAGCAACGTTTTTATCAACTAACGCAAATTTTAAATACACTCAAGCTAGTAAATAAA
    CATAATCAATTTGAGGACTTAGCAGATGACAATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    576

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL1502 [new locus tag: SACOL_RS07650 ]
  • symbol: SACOL1502
  • description: hypothetical protein
  • length: 191
  • theoretical pI: 6.58554
  • theoretical MW: 22596.5
  • GRAVY: -0.353927

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • BH1670 unknown conserved protein in B. subtilis
    CBSS-393130.3.peg.129  BH1670 unknown conserved protein in B. subtilis
  • PFAM:
    no clan defined UPF0302; UPF0302 domain (PF08864; HMM-score: 104.3)
    and 3 more
    IDEAL; IDEAL domain (PF08858; HMM-score: 32.6)
    HTH (CL0123) E2F_TDP; E2F/DP family winged-helix DNA-binding domain (PF02319; HMM-score: 14.8)
    no clan defined DUF1433; Protein of unknown function (DUF1433) (PF07252; HMM-score: 13)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00225
    • TAT(Tat/SPI): 0.000199
    • LIPO(Sec/SPII): 0.000282
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSETFNQIKESFIEYLLFQYRFKSRIAVWVLNYIKVNEAKLANIHFVDTKINHHETLEIAEVGSHASAIQFTKRNIKLMNTNEIFDYIANHNCAFDIQIHFANVSKREQRLDDLIVAQLTESPSYQTYLHDLNSMAIDRHKHALLIDYLLHNIDLSLQMNEKQRFYQLTQILNTLKLVNKHNQFEDLADDN

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: CodY (repression) regulon
    CodY(TF)important in Amino acid metabolism; RegPrecise    transcription unit transferred from N315 data RegPrecise 

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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