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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL1872 [new locus tag: SACOL_RS09605 ]
  • pan locus tag?: SAUPAN004573000
  • symbol: epiE
  • pan gene symbol?: epiE
  • synonym:
  • product: epidermin immunity protein F

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL1872 [new locus tag: SACOL_RS09605 ]
  • symbol: epiE
  • product: epidermin immunity protein F
  • replicon: chromosome
  • strand: -
  • coordinates: 1924200..1924961
  • length: 762
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    ATGATACATTTAAAGATAGAAGGTATCAAATTTAAAAATTCTTTCAGTATGTATGTTTTA
    TTAATAAGTCCGCTGGTATTTCTTTGTTTTGCTATTTTCACAGTCTTATTCGCCAAAAGT
    AATACGGGAACAGCGAATAGTGTGTCACCATATATAACTTTACTATTTAATATTTGGCCA
    ATTGCTTTCATCCCGATTGTATTATGTATGGCTTGTAATTCGTTATTTAAAATTGAAATG
    AGAAATAAATCATTTAATTATTACTTAAGTAATAATTGGTCGATTACAAAAGAAATAAGA
    GCAAAGATTTTCATTTTATCAATAGCATTTTTGGTACATTGCTTTTTAGTATTTATTATT
    GCTTATATAGGTGACCTAATTATTAATCCACATCCGGTTAATGCTATGTTGTTATTGGTG
    ACAATATTGTTGATGTATGTAGTATCTCTACCATTGATACCGCTCAACTTTTTATTAACT
    CGATACTTTGGTGTGTTCGTATCAATATTAATAAACTTAGTATTATCAGTCATTTGTGTC
    TTGTTTTTAACATTGAAGAGTTTATTTTGGGTGTTGCCGTGGGGGATAATGCAGAGAATC
    CCGCTTATTACGCTTGGTATACTACCTAATGGTTTAGTTGTAAACCATAATTCAAAATAC
    TTTAATGATCTCAATGCCTTATATATTTCGATTATTGTTAGCATCATTATTTTCGCGATA
    GTAACATTTTTAAATAATAAGAAAAGTTGGCGATTAAAATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    762

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL1872 [new locus tag: SACOL_RS09605 ]
  • symbol: EpiE
  • description: epidermin immunity protein F
  • length: 253
  • theoretical pI: 10.1479
  • theoretical MW: 28936.2
  • GRAVY: 1.11423

⊟Function[edit | edit source]

  • TIGRFAM:
    lantibiotic protection ABC transporter permease subunit, MutE/EpiE family (TIGR03732; HMM-score: 242.2)
    and 1 more
    lantibiotic protection ABC transporter permease subunit, MutG family (TIGR03733; HMM-score: 38)
  • TheSEED  :
    • Lantibiotic ABC transporter permease
  • PFAM:
    ABC-2 (CL0181) ABC2_membrane_4; ABC-2 family transporter protein (PF12730; HMM-score: 23.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: 0.5
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.031723
    • TAT(Tat/SPI): 0.001079
    • LIPO(Sec/SPII): 0.02915
  • predicted transmembrane helices (TMHMM): 7

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MIHLKIEGIKFKNSFSMYVLLISPLVFLCFAIFTVLFAKSNTGTANSVSPYITLLFNIWPIAFIPIVLCMACNSLFKIEMRNKSFNYYLSNNWSITKEIRAKIFILSIAFLVHCFLVFIIAYIGDLIINPHPVNAMLLLVTILLMYVVSLPLIPLNFLLTRYFGVFVSILINLVLSVICVLFLTLKSLFWVLPWGIMQRIPLITLGILPNGLVVNHNSKYFNDLNALYISIIVSIIIFAIVTFLNNKKSWRLK

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator: SigB* (activation) regulon
    SigB*(sigma factor)controlling a large regulon involved in stress/starvation response and adaptation;  [1]   other strains

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Markus Bischoff, Paul Dunman, Jan Kormanec, Daphne Macapagal, Ellen Murphy, William Mounts, Brigitte Berger-Bächi, Steven Projan
    Microarray-based analysis of the Staphylococcus aureus sigmaB regulon.
    J Bacteriol: 2004, 186(13);4085-99
    [PubMed:15205410] [WorldCat.org] [DOI] (P p)

⊟Relevant publications[edit | edit source]

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