From AureoWiki
Jump to navigation Jump to search

NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL2334 [new locus tag: SACOL_RS12270 ]
  • pan locus tag?: SAUPAN005834000
  • symbol: SACOL2334
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL2334 [new locus tag: SACOL_RS12270 ]
  • symbol: SACOL2334
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2395433..2396665
  • length: 1233
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    ATGCATAAGTTTTGGGCGACATTTACTTTGACATATATCAAAAAAATTAAAGCTAAATCA
    TTTGTAATTTTTATGATTATTATTGCTGCCTTAATGATTGGCCTATCTAACATTGATAAG
    ATTATTAACATGTTTGATGATGGTCCAGATAAAATTGGTGTAGCAGCACCGAATGAACAA
    ATCTATAAGGTTTTCAAGCAACAGGCGAATACATTTCATAGTGATGCTAAGTTTACTAAA
    GTTTCTATAGAAGATGCTGAAAAAGAAGTAAAAAAACATAAACTTGATAAAGCTTATATT
    ATCAAGGTGAATCAAAATCGCACGTTACAAGGGACAATCATTAGTGAGAAGCGAGTAAGT
    CATGAAGATTCACAAAAAGTACAAGCACTGCTTACAGCTATTCAAACAAATATGGTAGCC
    GGGGAATTAAATATCAACAAAGAAGACTTACAAAAATTACAAGCACAAAGTAAAGTTGAT
    AATAAGGTGATTTCTAATGATGAAGTCGATAAAGTATCAGAAGGACAAAAGATTTTCAAC
    TATGCTTTAGCTTATGGCATTATCTTTCTAATGTTCTTCATTGTTTTAAATTATGCATCT
    CAAATAGCTATGGAAATTGCTAGTGAGAAAACATCGCGTGTCATTGAAATGATTATTACA
    AGTATTTCACCAATCCAACATATTTTTGCTAAAATTTTAGGCGTTATAGCAGTTGCCGTG
    ACTCAGATTATTTTAATTGTATTGATGGCAGTTATATGCATTTTTGCCTTTGACTTAAAA
    GACTTGCTACAAGGTTTTAACGTGGAAATGAATCAATTGTCTTGGCAAATTATTATTGTC
    GGAATTATAAGTAGTATTGTTGGAATTACGGCGTATGTATTACTTGCAGCCATCCTCGGA
    TCATTAACATCTAGAATAGAAGATTTAAATCAATCTTTGATGCCACTGACATTACTTGGT
    ATGATTGCATTTTATATCGCGATATTCACGATAAATAATCCTGATGGACAACTTGCTTTA
    ATCACAAGTTATATTCCGTTTTTAGCGCCATTTCAATTAGTTGTACGCGCTCAAACTTCA
    GGGCTTCAAATATATGAGGTCATCTTAAGTTCTTTAATCTCAATTGTAATGGTAGCTGTC
    TTGATATGGATTGCAATTAAAACATATAAAGATTCAGTACTTACATTTGAACGTGGCTTA
    TTTAATTCAATGAAACGTGTATTTAAAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1233

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL2334 [new locus tag: SACOL_RS12270 ]
  • symbol: SACOL2334
  • description: hypothetical protein
  • length: 410
  • theoretical pI: 9.55044
  • theoretical MW: 45929.2
  • GRAVY: 0.48439

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Purine ribonucleotide biosynthesis inosine-5'-monophosphate dehydrogenase (TIGR01302; EC 1.1.1.205; HMM-score: 13.4)
  • TheSEED  :
    • ABC-type Na+ efflux pump, permease component
  • PFAM:
    ABC-2 (CL0181) ABC2_membrane_3; ABC-2 family transporter protein (PF12698; HMM-score: 167.8)
    and 3 more
    no clan defined ATP-gua_PtransN; ATP:guanido phosphotransferase, N-terminal domain (PF02807; HMM-score: 13.9)
    DUF502; Protein of unknown function (DUF502) (PF04367; HMM-score: 12.8)
    Abhydrolase_9_N; Alpha/beta-hydrolase family N-terminus (PF15420; HMM-score: 6.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 6
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -0.5
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.152211
    • TAT(Tat/SPI): 0.000814
    • LIPO(Sec/SPII): 0.142839
  • predicted transmembrane helices (TMHMM): 7

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MHKFWATFTLTYIKKIKAKSFVIFMIIIAALMIGLSNIDKIINMFDDGPDKIGVAAPNEQIYKVFKQQANTFHSDAKFTKVSIEDAEKEVKKHKLDKAYIIKVNQNRTLQGTIISEKRVSHEDSQKVQALLTAIQTNMVAGELNINKEDLQKLQAQSKVDNKVISNDEVDKVSEGQKIFNYALAYGIIFLMFFIVLNYASQIAMEIASEKTSRVIEMIITSISPIQHIFAKILGVIAVAVTQIILIVLMAVICIFAFDLKDLLQGFNVEMNQLSWQIIIVGIISSIVGITAYVLLAAILGSLTSRIEDLNQSLMPLTLLGMIAFYIAIFTINNPDGQLALITSYIPFLAPFQLVVRAQTSGLQIYEVILSSLISIVMVAVLIWIAIKTYKDSVLTFERGLFNSMKRVFKK

⊟Experimental data[edit | edit source]

  • experimentally validated: PeptideAtlas
  • protein localization: Integral membrane [1] [2]
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Dörte Becher, Kristina Hempel, Susanne Sievers, Daniela Zühlke, Jan Pané-Farré, Andreas Otto, Stephan Fuchs, Dirk Albrecht, Jörg Bernhardt, Susanne Engelmann, Uwe Völker, Jan Maarten van Dijl, Michael Hecker
    A proteomic view of an important human pathogen--towards the quantification of the entire Staphylococcus aureus proteome.
    PLoS One: 2009, 4(12);e8176
    [PubMed:19997597] [WorldCat.org] [DOI] (I e)
  2. ↑ Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
    The Staphylococcus aureus proteome.
    Int J Med Microbiol: 2014, 304(2);110-20
    [PubMed:24439828] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SACOL2334&oldid=100234"