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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL_RS12270 [old locus tag: SACOL2334 ]
- pan locus tag?: SAUPAN005834000
- symbol: SACOL_RS12270
- pan gene symbol?: —
- synonym:
- product: sodium ABC transporter permease
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL_RS12270 [old locus tag: SACOL2334 ]
- symbol: SACOL_RS12270
- product: sodium ABC transporter permease
- replicon: chromosome
- strand: -
- coordinates: 2395433..2396665
- length: 1233
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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1201ATGCATAAGTTTTGGGCGACATTTACTTTGACATATATCAAAAAAATTAAAGCTAAATCA
TTTGTAATTTTTATGATTATTATTGCTGCCTTAATGATTGGCCTATCTAACATTGATAAG
ATTATTAACATGTTTGATGATGGTCCAGATAAAATTGGTGTAGCAGCACCGAATGAACAA
ATCTATAAGGTTTTCAAGCAACAGGCGAATACATTTCATAGTGATGCTAAGTTTACTAAA
GTTTCTATAGAAGATGCTGAAAAAGAAGTAAAAAAACATAAACTTGATAAAGCTTATATT
ATCAAGGTGAATCAAAATCGCACGTTACAAGGGACAATCATTAGTGAGAAGCGAGTAAGT
CATGAAGATTCACAAAAAGTACAAGCACTGCTTACAGCTATTCAAACAAATATGGTAGCC
GGGGAATTAAATATCAACAAAGAAGACTTACAAAAATTACAAGCACAAAGTAAAGTTGAT
AATAAGGTGATTTCTAATGATGAAGTCGATAAAGTATCAGAAGGACAAAAGATTTTCAAC
TATGCTTTAGCTTATGGCATTATCTTTCTAATGTTCTTCATTGTTTTAAATTATGCATCT
CAAATAGCTATGGAAATTGCTAGTGAGAAAACATCGCGTGTCATTGAAATGATTATTACA
AGTATTTCACCAATCCAACATATTTTTGCTAAAATTTTAGGCGTTATAGCAGTTGCCGTG
ACTCAGATTATTTTAATTGTATTGATGGCAGTTATATGCATTTTTGCCTTTGACTTAAAA
GACTTGCTACAAGGTTTTAACGTGGAAATGAATCAATTGTCTTGGCAAATTATTATTGTC
GGAATTATAAGTAGTATTGTTGGAATTACGGCGTATGTATTACTTGCAGCCATCCTCGGA
TCATTAACATCTAGAATAGAAGATTTAAATCAATCTTTGATGCCACTGACATTACTTGGT
ATGATTGCATTTTATATCGCGATATTCACGATAAATAATCCTGATGGACAACTTGCTTTA
ATCACAAGTTATATTCCGTTTTTAGCGCCATTTCAATTAGTTGTACGCGCTCAAACTTCA
GGGCTTCAAATATATGAGGTCATCTTAAGTTCTTTAATCTCAATTGTAATGGTAGCTGTC
TTGATATGGATTGCAATTAAAACATATAAAGATTCAGTACTTACATTTGAACGTGGCTTA
TTTAATTCAATGAAACGTGTATTTAAAAAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL_RS12270 [old locus tag: SACOL2334 ]
- symbol: SACOL_RS12270
- description: sodium ABC transporter permease
- length: 410
- theoretical pI: 9.55044
- theoretical MW: 45929.2
- GRAVY: 0.48439
⊟Function[edit | edit source]
- TIGRFAM: Purines, pyrimidines, nucleosides, and nucleotides Purine ribonucleotide biosynthesis inosine-5'-monophosphate dehydrogenase (TIGR01302; EC 1.1.1.205; HMM-score: 13.4)
- TheSEED: see SACOL2334
- PFAM: ABC-2 (CL0181) ABC2_membrane_3; ABC-2 family transporter protein (PF12698; HMM-score: 167.8)and 3 moreno clan defined ATP-gua_PtransN; ATP:guanido phosphotransferase, N-terminal domain (PF02807; HMM-score: 13.9)DUF502; Protein of unknown function (DUF502) (PF04367; HMM-score: 12.8)Abhydrolase_9_N; Alpha/beta-hydrolase family N-terminus (PF15420; HMM-score: 6.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 6
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.152211
- TAT(Tat/SPI): 0.000814
- LIPO(Sec/SPII): 0.142839
- predicted transmembrane helices (TMHMM): 7
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MHKFWATFTLTYIKKIKAKSFVIFMIIIAALMIGLSNIDKIINMFDDGPDKIGVAAPNEQIYKVFKQQANTFHSDAKFTKVSIEDAEKEVKKHKLDKAYIIKVNQNRTLQGTIISEKRVSHEDSQKVQALLTAIQTNMVAGELNINKEDLQKLQAQSKVDNKVISNDEVDKVSEGQKIFNYALAYGIIFLMFFIVLNYASQIAMEIASEKTSRVIEMIITSISPIQHIFAKILGVIAVAVTQIILIVLMAVICIFAFDLKDLLQGFNVEMNQLSWQIIIVGIISSIVGITAYVLLAAILGSLTSRIEDLNQSLMPLTLLGMIAFYIAIFTINNPDGQLALITSYIPFLAPFQLVVRAQTSGLQIYEVILSSLISIVMVAVLIWIAIKTYKDSVLTFERGLFNSMKRVFKK
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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