From AureoWiki
Jump to navigation Jump to search
PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL2485 [new locus tag: SACOL_RS13020 ]
  • pan locus tag?: SAUPAN006040000
  • symbol: SACOL2485
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL2485 [new locus tag: SACOL_RS13020 ]
  • symbol: SACOL2485
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2541823..2542242
  • length: 420
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGTCCAAAAAACATGTTTTTATAATTATTGGTGTCATATTGTGTATATGTACAGTTTCT
    ACGGTCATGCATTTTAAAATGAAATATGATGAAAAAGAAAAACAAAAAGCGATTTACTAC
    AAAGAACAACAAGAACGTATTACACTCTATCTTAAGCATAATACTAAAGAAACGAACACG
    ATTAAATCTGTACATTTCACAAACTTGGAAACAAGTCCTATGGGAAGTGCTGTGATTGAA
    GGATACATCAATGAAAATAAAGAAGATGATTTTACTGCTTATGCATCGCCTGAACATAAT
    TATCAATTTGGTGGCGCTATGATAAAAAGTGAAGGAGTAGATAAATTATTAAAACCAGCA
    CATGAAAGAAAATCACCAGAAAAAATCAAAGAAGAATTAGATAAAAAAGAAGGCCACTAG
    60
    120
    180
    240
    300
    360
    420

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL2485 [new locus tag: SACOL_RS13020 ]
  • symbol: SACOL2485
  • description: hypothetical protein
  • length: 139
  • theoretical pI: 8.22284
  • theoretical MW: 16097.4
  • GRAVY: -0.716547

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Transport and binding proteins Carbohydrates, organic alcohols, and acids D-galactonate transporter (TIGR00893; HMM-score: 11.2)
  • TheSEED  :
    • FIG01108221: hypothetical protein
  • PFAM:
    no clan defined DUF1433; Protein of unknown function (DUF1433) (PF07252; HMM-score: 136)
    and 4 more
    GAPT; GRB2-binding adapter (GAPT) (PF11770; HMM-score: 15.1)
    Shisa; Wnt and FGF inhibitory regulator (PF13908; HMM-score: 14.1)
    Peptidase_AD (CL0130) Presenilin; Presenilin (PF01080; HMM-score: 11.2)
    Holin-II (CL0563) Phage_holin_2_3; Bacteriophage holin family HP1 (PF16080; HMM-score: 9.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helix: 1
  • LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -0.5
    • N-terminally Anchored Score: 2
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.252761
    • TAT(Tat/SPI): 0.002357
    • LIPO(Sec/SPII): 0.30525
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSKKHVFIIIGVILCICTVSTVMHFKMKYDEKEKQKAIYYKEQQERITLYLKHNTKETNTIKSVHFTNLETSPMGSAVIEGYINENKEDDFTAYASPEHNYQFGGAMIKSEGVDKLLKPAHERKSPEKIKEELDKKEGH

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SACOL2485&oldid=85879"