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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL_RS00230 [old locus tag: SACOL0043 ]
- pan locus tag?: SAUPAN000446000
- symbol: SACOL_RS00230
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL_RS00230 [old locus tag: SACOL0043 ]
- symbol: SACOL_RS00230
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 49535..51304
- length: 1770
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1741ATGAGTCATCATGACATTTTTAGACTAGGCCTATACCATTTAGATACAATGGGTTGGCAT
AAAACTATCCCACCTAAAAAAGATGGAGATGAGAAAAAAGTAGTGACTATGTCTAGTTGT
ATGGCTGTTGAAGCTAAATTTTGGCATGTCTTAGAAAATACAGAAAAAATAATTATTTCT
AACGGTAAGGATAAAGAACATACATTTGACTCTGATATTTTAACAACTCGAAAGTTACCT
TCCTTGATTAAATATGGTCACAGTATCAATGAAAATTATATAAAAGATTTGAGCTATGCA
CTACAATTAATGCGCGATGAAATGCCCACTTCTGATTTATATGATGGCTCGGGCATCATA
GAAACACCCCACGGTTATATTGTAATGATAGATACCATTTATACATCTAAACAATATGAT
CAATTATCATCTTTAGATCCTATTGTCGATAGTGCTTATCCATTAGAGCCTAAAGGTACA
TTTAAAGATTGGTTAAATATGTATATTAACGAAGTCAAAGGTCATCTTCTTCTAGAGTTA
GCGGTCGTATTTGGAATTTCTGCCTTAGTGACAAGCTTTCTGAAGTACAAACGTGAAATC
GAATTTGCAGGAATTATCTTTAGTTTTACAGGCCAGTCATCAACTGGTAAATCAACAGCA
GCAGCTTTAGCAGTATCCGTCGCTGGAAATCCAACTAAAGGTAATCAAACACTTTTTCGA
AGTTGGAATGCCACACGTAATGCACTTGAAAGTTACTTGAGTAACAATTTTGGTATACCT
ATTGTATTTGATGAACTCTCATCAGCAACTTTTAAAGATACAACGGGGTTATTGTACTCT
ATCGCTGAAGGTCAAGGGCGTCAACGTTCCAATGTACACGGAGAAGTTAAAACGCCTAAG
AATTGGGGCACTTCTGTGATTTCAACCTCTGAATACAGTATCTTTACTGATTCTGCTCAA
AACGATGGATTACGTGTAAGAACCATCGAGATTAATGAACAATTTACTACAAATGCGACC
AATGCTGACAATATCAAAAAAGCTGTGGCACTAAACCATGGTCATGTTTTACCGTTAGTA
GCTCAATACCTTATAAATCGTGAAGATGAAGTTATTCAATGGTTTTACAAGGAAGTAGAT
TGGTTTGAAGCTAAATTGAACAGTGAAACAAACAATACAGGTATTCGTATGTTTAAGCGT
TATGCAGTCATTACAACATCTGCGAAAATATTAGGTCGTGTTTTAGCTACAGATATTGAT
ATCGCTAAAATCAGAGACTACTTTATTGATTATCATGCTCATACAGTCTCTGAACGATCA
CTGGCAGATAAAGCGATCGAAGTCATTACTCAATTTGTAGCACAAAACCGTGGTAAATTT
TCTGATGATACAGCGTTAAAGAATATGTTCGAGAACTATGGACTAATTGCCTTAAAAGAT
AATCATATCGAAGTCAAAATCATTGCGTCTGTATTTAAAAATATGTTGTTAGAGCATCAC
TTCCAAGATGTTAATAATGTTGTTAATGCGCTAAGGGATAAAGGATTTATCGAATCTGAC
CATGATCGAATTACAACAAAAAGAACAGTCAAAGATGGCAATGGCAAAAAACAGTCACTT
GTCTTTTACCATTTAAAGCTAGATTCAGAATATGCGTCTATTTTTGGTCTAACTAAAGAT
GCTGAACCTATTAAAGCTGAAATTAACTTGGATAACAAAAAGATACTTGAATCATGGAAA
AAACAGAATGATGATTTAATTGATTTTTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL_RS00230 [old locus tag: SACOL0043 ]
- symbol: SACOL_RS00230
- description: hypothetical protein
- length: 589
- theoretical pI: 6.56253
- theoretical MW: 66710.1
- GRAVY: -0.331919
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: see SACOL0043
- PFAM: P-loop_NTPase (CL0023) DUF927; Domain of unknown function (DUF927) (PF06048; HMM-score: 212.3)and 1 moreTransthyretin (CL0287) GramPos_pilinD3; Gram-positive pilin backbone subunit 3, Cna-B-like domain (PF16570; HMM-score: 14.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.009049
- TAT(Tat/SPI): 0.000329
- LIPO(Sec/SPII): 0.003712
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MSHHDIFRLGLYHLDTMGWHKTIPPKKDGDEKKVVTMSSCMAVEAKFWHVLENTEKIIISNGKDKEHTFDSDILTTRKLPSLIKYGHSINENYIKDLSYALQLMRDEMPTSDLYDGSGIIETPHGYIVMIDTIYTSKQYDQLSSLDPIVDSAYPLEPKGTFKDWLNMYINEVKGHLLLELAVVFGISALVTSFLKYKREIEFAGIIFSFTGQSSTGKSTAAALAVSVAGNPTKGNQTLFRSWNATRNALESYLSNNFGIPIVFDELSSATFKDTTGLLYSIAEGQGRQRSNVHGEVKTPKNWGTSVISTSEYSIFTDSAQNDGLRVRTIEINEQFTTNATNADNIKKAVALNHGHVLPLVAQYLINREDEVIQWFYKEVDWFEAKLNSETNNTGIRMFKRYAVITTSAKILGRVLATDIDIAKIRDYFIDYHAHTVSERSLADKAIEVITQFVAQNRGKFSDDTALKNMFENYGLIALKDNHIEVKIIASVFKNMLLEHHFQDVNNVVNALRDKGFIESDHDRITTKRTVKDGNGKKQSLVFYHLKLDSEYASIFGLTKDAEPIKAEINLDNKKILESWKKQNDDLIDF
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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