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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL_RS03435 [old locus tag: SACOL0664 ]
- pan locus tag?: SAUPAN002475000
- symbol: SACOL_RS03435
- pan gene symbol?: —
- synonym:
- product: endonuclease III domain-containing protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL_RS03435 [old locus tag: SACOL0664 ]
- symbol: SACOL_RS03435
- product: endonuclease III domain-containing protein
- replicon: chromosome
- strand: +
- coordinates: 692691..693326
- length: 636
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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601ATGTTAGGAACTGATGAATTATATAAAGTTTTATATGAACATCTCGGACCACAATTTTGG
TGGCCTGCTGATAATGACATTGAAATGATGTTAGGTGCAATTTTAGTTCAAAATACTAGA
TGGCGAAATGCAGAAATTGCATTGAATCAGATTAAAGAACATACGCATTTTAATCCAAAT
CATATATTAGAACTACCTATTGAAACGTTACAATCATTGATACATTCAAGTGGCTTTTAT
AAAAGTAAATCACTGACGATTAAAACATTATTAACATGGTTAGCACGACATCATTTCAAT
TATCAAGAGATTAATGAGCGATATAAAGGTGGATTAAGAAAAGAATTATTATCTTTGAAA
GGTATTGGAAGTGAAACAGCAGATGTCTTACTTGTTTATATATTCGGACGTATTGAATTT
ATTCCAGATAGCTATACAAGAAAAATATATGATAAATTAGGATATGAAAACACTAAAAAT
TATGATCAATTAAAAAAAGTAGTCACATTACCAAATCATTTTACAAATCAAGATGCTAAT
GAATTTCATGCTCTGTTAGATGTATTTGGTAAACATTACTTTAGAGACAAAGATATAAAG
AATTATGATTTTTTAGAACCTTACTTTAAAAAGTAA60
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636
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL_RS03435 [old locus tag: SACOL0664 ]
- symbol: SACOL_RS03435
- description: endonuclease III domain-containing protein
- length: 211
- theoretical pI: 7.4149
- theoretical MW: 25016.4
- GRAVY: -0.492417
⊟Function[edit | edit source]
- TIGRFAM: DNA metabolism DNA replication, recombination, and repair endonuclease III (TIGR01083; EC 4.2.99.18; HMM-score: 46.9)and 1 moreDNA metabolism DNA replication, recombination, and repair 8-oxoguanine DNA-glycosylase (ogg) (TIGR00588; EC 3.2.2.-; HMM-score: 16)
- TheSEED: see SACOL0664
- PFAM: HHH (CL0198) HhH-GPD; HhH-GPD superfamily base excision DNA repair protein (PF00730; HMM-score: 32.2)and 1 moreHHH; Helix-hairpin-helix motif (PF00633; HMM-score: 21.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.001499
- TAT(Tat/SPI): 0.000122
- LIPO(Sec/SPII): 0.000247
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MLGTDELYKVLYEHLGPQFWWPADNDIEMMLGAILVQNTRWRNAEIALNQIKEHTHFNPNHILELPIETLQSLIHSSGFYKSKSLTIKTLLTWLARHHFNYQEINERYKGGLRKELLSLKGIGSETADVLLVYIFGRIEFIPDSYTRKIYDKLGYENTKNYDQLKKVVTLPNHFTNQDANEFHALLDVFGKHYFRDKDIKNYDFLEPYFKK
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.