From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS08715 [old locus tag: SACOL1707 ]
  • pan locus tag?: SAUPAN004262000
  • symbol: SACOL_RS08715
  • pan gene symbol?: radC
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS08715 [old locus tag: SACOL1707 ]
  • symbol: SACOL_RS08715
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1736692..1737363
  • length: 672
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (1736692..1737363) NCBI
  • BioCyc: SACOL_RS08715 BioCyc
  • MicrobesOnline: see SACOL1707

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCG
    AATACAGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGAC
    ATTAGTAATGAACTGCTTAAATCTGCTTCGAATCTGAATGAATTGAAAAAATCTTCAATT
    AACGATTTGATAAAAGTTAAAGGGATTGGATTACAAAAAGCAATTACTTTAAAAGCAGCA
    TTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAA
    CCAAGTGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTT
    GTCATTTTATTGTTAAATTCAAAAAATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGT
    ACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATTGCGGTGAGAGAAAAT
    GCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAA
    GATATCATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTG
    GATCATATTATAATCGGTGATAATAGATTTACCAGTCTTGTAGAAGCGGGTTACTTTGAT
    GAAAATGATTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    672

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS08715 [old locus tag: SACOL1707 ]
  • symbol: SACOL_RS08715
  • description: hypothetical protein
  • length: 223
  • theoretical pI: 6.79799
  • theoretical MW: 24681.3
  • GRAVY: -0.0878924

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DNA repair protein RadC (TIGR00608; HMM-score: 234.2)
  • TheSEED: see SACOL1707
  • PFAM:
    JAB (CL0366) RadC; RadC-like JAB domain (PF04002; HMM-score: 153.7)
    and 2 more
    HHH (CL0198) HHH_2; Helix-hairpin-helix motif (PF12826; HMM-score: 16.2)
    JAB (CL0366) Prok-JAB; Prokaryotic homologs of the JAB domain (PF14464; HMM-score: 14.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008303
    • TAT(Tat/SPI): 0.007631
    • LIPO(Sec/SPII): 0.001865
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSIAVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

⊟Experimental data[edit | edit source]

  • experimentally validated: see SACOL1707
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SACOL_RS08715&oldid=99338"