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NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS14000 [old locus tag: SACOL2673 ]
  • pan locus tag?: SAUPAN006385000
  • symbol: SACOL_RS14000
  • pan gene symbol?: asp2
  • synonym:
  • product: accessory Sec system protein Asp2

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS14000 [old locus tag: SACOL2673 ]
  • symbol: SACOL_RS14000
  • product: accessory Sec system protein Asp2
  • replicon: chromosome
  • strand: -
  • coordinates: 2743642..2745210
  • length: 1569
  • essential: unknown

Accession numbers[edit | edit source]

  • Location: NC_002951 (2743642..2745210) NCBI
  • BioCyc: G1G4B-2926 BioCyc
  • MicrobesOnline:

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    ATGCCACGTAAATTTAGAGTTTTGCAAATTGGAGGAGACGATTTAGAACCTATTTTTCAA
    CACAAAAAAGGTGTGAGTTGGGATTACTTCGATATTGGATTGTTTGAATTTGATAGTGGT
    TATGTAGAGGCTATTGAAGCGATTGTTGAAGCAGAAGGGCGCTTTGATTTTATCTATATT
    CAAGCACCATACTCGGAGACATTAACGAATTTATTACAAATGATAAGCGAACCATACAAT
    ACGTATGTTGATGAATCATTTTGGTCAGTTGAATATGAACAAGACGAAAATGTCCAAAAA
    TACGTTGTTCAACCATTACATTACCGGAATATTGAAGAACGTAATAATAAATTAGAGGCA
    GTTAGCTTCTCAGGACAGTATGGAGATAAGGTTTCTCCTAAGTTAGCACTTGTGCATCCG
    AATTTTAAAGGAGATGTCGTTTACCAAGGTAATTCAGAGCTCACATTGAGTGGAGAATTT
    AGGAAAGAATTTAAACCTATCGCATCTTGGCAAAATAATCTCGTTTACGATAAAGATAAA
    GTCATTCAAATATGGCCAGAATTTGATATTGATGGTGCGGTCGAGTTGCAATATACATTT
    AGATTGATTCAGACTGGCGCTGATGGTGCATTAATTGAACAAATCGTATTGACTGATGAT
    ATGTTAGACAGTCCTTTAGAGATACCTGCGAAACCATTTGATGCTTATATAAGTGTAACT
    GTTAAGGCGCGTGGGAACGGGACGGTACATTTAGGACCTATACACAAACGATGGTCTAGA
    TTAGACATGGGTCAATTTTTACTTGGTGGTAGTCGTTTCGTAGATAGTCAACGACAGGAA
    TTTATTTATTATTTCCACCCTGGTGATATGAAACCGCCACTAAACGTATATTTTAGTGGT
    TATCGAACAGCGGAAGGTTTCGAAGGATATTATATGATGAAACGTATGAATGCACCGTTT
    TTACTTATCGGCGATCCTCGTGTTGAAGGTGGTAGTTTTTATATCGGTTCATCTGAATAT
    GAACAAGGTATTATCAATGTTATTGACGAGACATTAGAAAAGCTGAATTTTAAATCACAT
    GAATTAATATTATCTGGTTTATCTATGGGTTCATTTGGTGCCTTGTATTATGGTGCTCAG
    TTAAATCCTCAGGCAATTATTGTTGGTAAACCACTTGTTAATATTGGAACGATTGCTGAA
    CATATGCGATTACTTAGACCAGAAGAGTTCGGTACAGCATTAGACGTCCTGGTGTCTAAT
    GAAGGTGATACATCTCAAGCGTCGATACAGGCATTAAATCAAAAATTTTGGCAAACATTT
    CAAAAGAAATCATTGTCACAAACTGTTTTTGCCATAGCATATATGCAACATGATGATTAT
    GATCCACATGCATTTCAAGAGCTATTACCTGTATTGACAGCACACCAAGCAAGAGTGATG
    AATCGCAGTATTCCTGGGCGACATAATGATGATTCACCTACCATTGCAAGTTGGTTTGTT
    AATTTTTACAACATTATTTTGGAAGACAAGTTTGGGAGAGTTCAACATGCTGAAAAACAA
    AACATTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1569

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SACOL_RS14000 [old locus tag: SACOL2673 ]
  • symbol: SACOL_RS14000
  • description: accessory Sec system protein Asp2
  • length: 522
  • theoretical pI: 4.73857
  • theoretical MW: 59668.9
  • GRAVY: -0.312644

Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Pathogenesis accessory Sec system protein Asp2 (TIGR03712; HMM-score: 804.9)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking accessory Sec system protein Asp2 (TIGR03712; HMM-score: 804.9)
    and 1 more
    Genetic information processing Protein synthesis tRNA and rRNA base modification 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD (TIGR00095; EC 2.1.1.171; HMM-score: 12.5)
  • TheSEED:
  • PFAM:
    AB_hydrolase (CL0028) Asp2; Accessory Sec system GspB-transporter (PF16929; HMM-score: 717.8)
    and 4 more
    no clan defined DUF3741; Protein of unknown function (DUF3741) (PF12552; HMM-score: 13.1)
    DUF3473; Domain of unknown function (DUF3473) (PF11959; HMM-score: 12.9)
    Viral_Gag (CL0148) Gag_p24; gag gene protein p24 (core nucleocapsid protein) (PF00607; HMM-score: 11.5)
    AB_hydrolase (CL0028) PAE; Pectinacetylesterase (PF03283; HMM-score: 11.2)

Structure, modifications & interactions[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002767
    • TAT(Tat/SPI): 0.000127
    • LIPO(Sec/SPII): 0.000277
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

  • GI: 447060221 NCBI
  • RefSeq: WP_001137477 NCBI
  • UniProt:

Protein sequence[edit | edit source]

  • MPRKFRVLQIGGDDLEPIFQHKKGVSWDYFDIGLFEFDSGYVEAIEAIVEAEGRFDFIYIQAPYSETLTNLLQMISEPYNTYVDESFWSVEYEQDENVQKYVVQPLHYRNIEERNNKLEAVSFSGQYGDKVSPKLALVHPNFKGDVVYQGNSELTLSGEFRKEFKPIASWQNNLVYDKDKVIQIWPEFDIDGAVELQYTFRLIQTGADGALIEQIVLTDDMLDSPLEIPAKPFDAYISVTVKARGNGTVHLGPIHKRWSRLDMGQFLLGGSRFVDSQRQEFIYYFHPGDMKPPLNVYFSGYRTAEGFEGYYMMKRMNAPFLLIGDPRVEGGSFYIGSSEYEQGIINVIDETLEKLNFKSHELILSGLSMGSFGALYYGAQLNPQAIIVGKPLVNIGTIAEHMRLLRPEEFGTALDVLVSNEGDTSQASIQALNQKFWQTFQKKSLSQTVFAIAYMQHDDYDPHAFQELLPVLTAHQARVMNRSIPGRHNDDSPTIASWFVNFYNIILEDKFGRVQHAEKQNI

Experimental data[edit | edit source]

  • experimentally validated: no data available

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]