PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN001831000
• symbol^?: —
• synonym:
• description^?: phage major capsid protein

  descriptions from strain specific annotations:

  • phage major capsid protein
  • phiSLT ORF387-like protein
  • prophage L54a, major capsid protein
  • bacteriophage capsid protein
  • phage major capsid protein, HK97 family
  • phage major capsid protein HK97
  • phage protein
• strand^?: -
• coordinates^?: 2276138..2277301
• synteny block^?: BlockID0012070
• occurrence^?: in 45% of 33 strains

⊟Orthologs

COL:
SACOL0370
N315:
—
NCTC8325:
SAOUHSC_01535
Newman:
—
USA300_FPR3757:
SAUSA300_1401
04-02981:
—
08BA02176:
C248_0352
11819-97:
MS7_1465
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
SAAV_2029
HO 5096 0412:
SAEMRSA15_13710
JH1:
SaurJH1_1082
JH9:
SaurJH9_1062
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
SAR1516
MSHR1132:
—
MSSA476:
SAS0935
Mu3:
—
Mu50:
—
MW2:
MW1398
RF122:
—
ST398:
SAPIG0376
T0131:
—
TCH60:
HMPREF0772_11693
TW20:
—
USA300_TCH1516:
USA300HOU_1450
VC40:
—

⊟Genome Viewer

COL
NCTC8325
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MPTLYELKQSLGMIGQQLKNKNDELSQKATDPNIDMEDIKQLETEKAGLQQRFNIVERQV
  NCTC8325        MPTLYELKQSLGMIGQQLKNKNDELSQKATDPNIDMEDIKQLETEKAGLQQRFNIVERQV
  USA300_FPR3757  MPTLYELKQSLGMIGQQLKNKNDELSQKATDPNIDMEDIKQLETEKAGLQQRFNIVERQV
                  ************************************************************
  
  COL             QDIEEKEKAKVKDKGEAYQSLSDNEKMVKAKAEFYRHAILPNEFEKPSMEAQRLLHALPT
  NCTC8325        QDIEEKEKAKVKDKGEAYQSLSDNEKMVKAKAEFYRHAILPNEFEKPSMEAQRLLHALPT
  USA300_FPR3757  QDIEEKEKAKVKDKGEAYQSLSDNEKMVKAKAEFYRHAILPNEFEKPSMEAQRLLHALPT
                  ************************************************************
  
  COL             GNDSGGDKLLPKTLSKEIVSEPFAKNQLREKARLTNIKGLEIPRVSYTLDDDDFITDVET
  NCTC8325        GNDSGGDKLLPKTLSKEIVSEPFAKNQLREKARLTNIKGLEIPRVSYTLDDDDFITDVET
  USA300_FPR3757  GNDSGGDKLLPKTLSKEIVSEPFAKNQLREKARLTNIKGLEIPRVSYTLDDDDFITDVET
                  ************************************************************
  
  COL             AKELKAKGDTVKFTTNKFKVFAAISDTVIHGSDVDLVNWVENALQSGLAAKERKDALAVS
  NCTC8325        AKELKAKGDTVKFTTNKFKVFAAISDTVIHGSDVDLVNWVENALQSGLAAKERKDALAVS
  USA300_FPR3757  AKELKAKGDTVKFTTNKFKVFAAISDTVIHGSDVDLVNWVENALQSGLAAKERKDALAVS
                  ************************************************************
  
  COL             PKSGLEHMSFYNGSVKEVEGADMYDAIINALADLHEDYRDNATIYMRYADYVKIISVLSN
  NCTC8325        PKSGLEHMSFYNGSVKEVEGADMYDAIINALADLHEDYRDNATIYMRYADYVKIISVLSN
  USA300_FPR3757  PKSGLEHMSFYNGSVKEVEGADMYDAIINALADLHEDYRDNATIYMRYADYVKIISVLSN
                  ************************************************************
  
  COL             GTTNFFDTPAEKVFGKPVVFTDAAVKPIVGDFNYFGINYDGTTYDTDKDVKKGEYLFVLT
  NCTC8325        GTTNFFDTPAEKVFGKPVVFTDAAVKPIVGDFNYFGINYDGTTYDTDKDVKKGEYLFVLT
  USA300_FPR3757  GTTNFFDTPAEKVFGKPVVFTDAAVKPIVGDFNYFGINYDGTTYDTDKDVKKGEYLFVLT
                  ************************************************************
  
  COL             AWYDQQRTLDSAFRIAKAKENTGPLPS
  NCTC8325        AWYDQQRTLDSAFRIAKAKENTGPLPS
  USA300_FPR3757  AWYDQQRTLDSAFRIAKAKENTGPLPS
                  ***************************