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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_1401 [new locus tag: SAUSA300_RS07645 ]
  • pan locus tag?: SAUPAN001831000
  • symbol: SAUSA300_1401
  • pan gene symbol?: —
  • synonym:
  • product: phiSLT ORF387-like protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_1401 [new locus tag: SAUSA300_RS07645 ]
  • symbol: SAUSA300_1401
  • product: phiSLT ORF387-like protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1566899..1568062
  • length: 1164
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGCCGACATTATATGAATTAAAACAATCCTTAGGTATGATTGGACAACAATTAAAAAAT
    AAAAATGATGAATTGAGTCAGAAAGCAACAGATCCAAATATTGATATGGAAGACATCAAA
    CAACTAGAAACAGAAAAAGCAGGTTTACAACAAAGATTTAACATTGTTGAAAGACAAGTG
    CAAGACATTGAAGAGAAAGAAAAAGCGAAAGTTAAAGATAAAGGAGAAGCTTATCAATCT
    TTAAGTGATAATGAGAAGATGGTTAAAGCTAAGGCAGAGTTTTATCGTCACGCGATTTTA
    CCAAATGAATTTGAAAAACCTTCAATGGAGGCACAACGTTTATTACACGCTTTACCAACA
    GGAAATGATTCAGGTGGAGATAAGCTCTTACCAAAAACACTTTCTAAAGAAATTGTTTCA
    GAACCATTTGCTAAAAACCAATTACGTGAAAAAGCTCGTCTAACTAACATTAAAGGTTTA
    GAGATTCCAAGAGTTTCATACACTTTAGACGATGATGATTTCATTACAGACGTAGAAACA
    GCAAAAGAATTAAAAGCAAAAGGTGATACAGTCAAGTTCACTACTAATAAATTCAAAGTA
    TTTGCTGCAATTTCAGATACTGTAATTCATGGATCAGATGTAGATTTAGTAAACTGGGTT
    GAAAACGCACTACAATCAGGATTAGCAGCTAAAGAGCGTAAAGATGCCTTAGCAGTAAGT
    CCTAAATCTGGATTAGAACACATGTCATTTTATAATGGATCTGTTAAAGAAGTTGAGGGA
    GCAGACATGTATGATGCTATTATTAACGCTTTAGCAGATTTACATGAAGATTATCGTGAT
    AACGCAACAATTTATATGCGATATGCAGATTATGTCAAAATTATTAGTGTTCTTTCAAAT
    GGAACAACAAATTTCTTTGACACACCAGCAGAAAAAGTATTTGGCAAACCAGTAGTATTT
    ACAGATGCAGCAGTTAAACCTATTGTGGGAGATTTCAATTATTTTGGAATTAACTATGAT
    GGAACAACTTATGACACTGATAAAGATGTTAAAAAAGGCGAATATTTGTTTGTATTAACA
    GCATGGTATGATCAGCAACGTACATTAGACAGTGCATTCAGAATTGCAAAAGCAAAAGAA
    AATACAGGTCCATTACCCAGCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1164

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_1401 [new locus tag: SAUSA300_RS07645 ]
  • symbol: SAUSA300_1401
  • description: phiSLT ORF387-like protein
  • length: 387
  • theoretical pI: 4.90802
  • theoretical MW: 43500.7
  • GRAVY: -0.564858

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing Mobile and extrachromosomal element functions Prophage functions phage major capsid protein, HK97 family (TIGR01554; HMM-score: 98.7)
  • TheSEED  :
    • Phage major capsid protein
  • PFAM:
    Phage-coat (CL0373) Phage_capsid; Phage capsid family (PF05065; HMM-score: 61.7)
    and 5 more
    no clan defined HAUS-augmin3; HAUS augmin-like complex subunit 3 (PF14932; HMM-score: 13.9)
    ATG16; Autophagy protein 16 (ATG16) (PF08614; HMM-score: 13)
    Cep57_CLD_2; Centrosome localisation domain of PPC89 (PF14197; HMM-score: 11)
    BCLiA (CL0551) APG6; Autophagy protein Apg6 (PF04111; HMM-score: 8.1)
    no clan defined IncA; IncA protein (PF04156; HMM-score: 6.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002766
    • TAT(Tat/SPI): 0.000347
    • LIPO(Sec/SPII): 0.000721
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MPTLYELKQSLGMIGQQLKNKNDELSQKATDPNIDMEDIKQLETEKAGLQQRFNIVERQVQDIEEKEKAKVKDKGEAYQSLSDNEKMVKAKAEFYRHAILPNEFEKPSMEAQRLLHALPTGNDSGGDKLLPKTLSKEIVSEPFAKNQLREKARLTNIKGLEIPRVSYTLDDDDFITDVETAKELKAKGDTVKFTTNKFKVFAAISDTVIHGSDVDLVNWVENALQSGLAAKERKDALAVSPKSGLEHMSFYNGSVKEVEGADMYDAIINALADLHEDYRDNATIYMRYADYVKIISVLSNGTTNFFDTPAEKVFGKPVVFTDAAVKPIVGDFNYFGINYDGTTYDTDKDVKKGEYLFVLTAWYDQQRTLDSAFRIAKAKENTGPLPS

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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