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⊟Summary[edit | edit source]
- pan ID?: SAUPAN001834000
- symbol?: —
- synonym:
- description?: terminase
- terminase
- phage terminase large subunit
- phiSLT ORF 563-like protein, terminase, large subunit
- prophage L54a, terminase, large subunit
- phage terminase
- phage Terminase family protein
- putative phage terminase, large subunit
- terminase large subunit
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 2279313..2286309
- synteny block?: BlockID0012100
- occurrence?: in 45% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
—
08BA02176:
C248_0349
11819-97:
MS7_1468
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
SAAV_2032
HO 5096 0412:
SAEMRSA15_13740
JH1:
SaurJH1_1079
JH9:
SaurJH9_1059
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
SAR1519
MSHR1132:
—
MSSA476:
SAS0932
Mu3:
—
Mu50:
—
MW2:
MW1401
RF122:
—
ST398:
SAPIG0373
T0131:
—
TCH60:
HMPREF0772_11690
TW20:
—
USA300_TCH1516:
USA300HOU_1453
VC40:
—
⊟Genome Viewer[edit | edit source]
| COL | |
| NCTC8325 | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MTIKVLNEPSPKLLTTWYAEQVTQGKIKTSKYVRKECERHLRYLENGGKWVFDEELAHRP
NCTC8325 MTIKVLNEPSPKLLTTWYAEQVTQGKIKTSKYVKKECERHLRYLENGGKWVFDEELAHRP
USA300_FPR3757 MTIKVLNEPSPKLLTTWYAEQVTQGKIKTSKYVKKECERHLRYLENGGKWVFDEELAHRP
*********************************:**************************
COL IRFIEKFCKPSKGSKRQLVLQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTT
NCTC8325 IRFIEKFCKPSKGSKRQLVLQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTT
USA300_FPR3757 IRFIEKFCKPSKGSKRQLVLQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTT
************************************************************
COL ISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLDKNFRTLRDEIHYD
NCTC8325 ISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLRENFRPLRDEIHYD
USA300_FPR3757 ISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLDKNFRTLRDEIHYD
********************************************** :***.********
COL ATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAG
NCTC8325 ATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAG
USA300_FPR3757 ATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAG
************************************************************
COL YQLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSINLD
NCTC8325 YQLDGPLVNMVEAGRDTLDRIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSIDLA
USA300_FPR3757 YQLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSINLD
********:**********:*************************************:*
COL EMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPCTI
NCTC8325 EMKEEWEKAKRTPDERGDFITKRFNIFANNDEMSFIDYPTLQKNNDIISLDELEGRPCTI
USA300_FPR3757 EMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPCTI
************* *******************************:*:**:*********
COL GYDLSETEDFTAACATFALDNGKVAVLSHSWIPKHKVEYSNEKIPYREWEEDGLLTVQDK
NCTC8325 GYDLSETEDFTAACATFALDNGKVAVLTHSWIPKHKVEYSNEKIPYIEWEEDGLLTIQDN
USA300_FPR3757 GYDLSETEDFTAACATFALDNGKVAVLSHSWIPKHKVEYSNEKIPYREWEEDGLLTVQDK
***************************:****************** *********:**:
COL PYIDYQDVLNWIIKMNEHYVVEKITYDRANAFKLNQELKNYGFETEETRQGALTLSPALK
NCTC8325 PYIDYQDVLNWIIKMNEHYVVEKITYDRANAFKLNQELKNYGFETEETRQGALTLSPALK
USA300_FPR3757 PYIDYQDVLNWIIKMNEHYVVEKITYDRANAFKLNQELKNYGFETEETRQGALTLSPALK
************************************************************
COL DLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKIDGFAAFLNTYTDI
NCTC8325 DLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKIDGFAAFLNTYTDI
USA300_FPR3757 DLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKIDGFAAFLNTYTDI
************************************************************
COL MNKVVSDSGEGNIEFISIKDIMR
NCTC8325 MNKVVSDKGEGNIEFISIKDIMR
USA300_FPR3757 MNKVVSDKGEGNIEFISIKDIMR
*******.***************