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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL0367 [new locus tag: SACOL_RS01845 ]
- pan locus tag?: SAUPAN001834000
- symbol: SACOL0367
- pan gene symbol?: —
- synonym:
- product: prophage L54a, terminase, large subunit
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL0367 [new locus tag: SACOL_RS01845 ]
- symbol: SACOL0367
- product: prophage L54a, terminase, large subunit
- replicon: chromosome
- strand: +
- coordinates: 374227..375918
- length: 1692
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3236796 NCBI
- RefSeq: YP_185259 NCBI
- BioCyc: see SACOL_RS01845
- MicrobesOnline: 911838 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1681GTGACTATTAAAGTTTTAAATGAACCTTCACCAAAACTATTAACAACATGGTATGCAGAG
CAAGTCACTCAAGGGAAAATAAAAACAAGCAAATATGTTAGAAAAGAATGTGAGAGACAT
CTTAGATATCTAGAAAATGGAGGTAAATGGGTATTTGATGAAGAATTAGCGCATCGTCCT
ATTCGATTTATAGAAAAGTTTTGTAAACCTTCCAAAGGATCTAAACGTCAACTTGTATTA
CAGCCATGGCAACATTTTATTATCGGCAGTTTGTTTGGTTGGGTTCATAAAGAAACAAAA
CTGCGCAGGTTTAAAGAAGCTTTGATATTTATGGGGCGAAAAAATGGTAAAACAACCACT
ATTTCTGGGGTTGCTAACTATGCTGTATCACAAGATGGAGAAAATGGTGCAGAAATTCAT
TTGTTAGCAAACGTAATGAAACAAGCTAGGATTCTATTTGATGAATCTAAGGCGATGATA
AAAGCTAGCCCAAAGCTTGATAAAAATTTCAGAACATTAAGAGATGAAATCCATTATGAC
GCAACGATATCAAAAATTATGCCCCAAGCATCAGATAGCGATAAGTTAGATGGATTGAAT
ACACACATGGGGATTTTTGATGAAATTCATGAATTTAAAGACTATAAATTGATTTCAGTT
ATAAAAAACTCAAGAGCTGCAAGGTTACAACCTCTTCTCATCTACATTACGACAGCAGGG
TATCAATTAGATGGTCCACTTGTTGATATGGTAGAAGCGGGAAGAGACACCTTAGATCAA
ATCATAGAAGACGAAAGAACTTTTTATTATTTAGCATCTTTGGATGATGACGATGATATT
AATGATTCGTCGAACTGGATAAAAGCAAATCCCAACTTAGGTGTCTCTATAAATTTAGAT
GAGATGAAAGAAGAGTGGGAAAAAGCTAAGAGAACACCAGCTGAACGTGGAGATTTTATA
ACCAAAAGGTTTAATATCTTTGCTAATAATGACGAGATGAGTTTTATTGATTACCCAACA
CTCCAAAAAAATAATGAAATTGTTTCTTTAGAAGAGCTGGAAGGCAGACCGTGCACGATT
GGTTATGATTTATCAGAAACAGAGGACTTTACAGCCGCGTGTGCTACTTTTGCGTTAGAT
AATGGTAAAGTTGCAGTTTTATCGCATTCATGGATTCCTAAGCACAAAGTTGAATATTCT
AACGAAAAAATACCCTATAGAGAATGGGAAGAAGATGGTTTATTAACAGTGCAAGATAAG
CCTTATATTGACTACCAAGATGTTTTAAATTGGATAATTAAGATGAATGAGCATTATGTA
GTAGAAAAAATTACTTATGATAGAGCGAACGCATTCAAACTAAATCAAGAGTTAAAAAAT
TACGGGTTTGAAACGGAAGAAACAAGACAAGGAGCTTTGACCTTGAGCCCTGCATTGAAG
GATTTAAAAGAAATGTTTTTAGATGGGAAAATAATATTTAATAATAATCCTTTAATGAAA
TGGTATATCAATAATGTTCAGTTGAAACTAGACAGAAACGGAAACTGGTTGCCGTCTAAG
CAAAGCAGATATCGTAAAATAGATGGCTTTGCAGCATTTTTAAACACATATACAGATATT
ATGAATAAAGTTGTTTCTGATAGTGGTGAAGGAAACATAGAGTTTATTAGTATTAAAGAC
ATAATGCGTTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL0367 [new locus tag: SACOL_RS01845 ]
- symbol: SACOL0367
- description: prophage L54a, terminase, large subunit
- length: 563
- theoretical pI: 6.03369
- theoretical MW: 65210.7
- GRAVY: -0.550089
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED :
- Phage terminase large subunit
- PFAM: P-loop_NTPase (CL0023) Terminase_1; Phage Terminase (PF03354; HMM-score: 276.5)and 3 moreno clan defined Tail_tube; Phage tail tube protein (PF10618; HMM-score: 13.9)CagD; Pathogenicity island component CagD (PF16567; HMM-score: 13.8)COP23; Circadian oscillating protein COP23 (PF14218; HMM-score: 13)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.009626
- TAT(Tat/SPI): 0.000293
- LIPO(Sec/SPII): 0.002742
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MTIKVLNEPSPKLLTTWYAEQVTQGKIKTSKYVRKECERHLRYLENGGKWVFDEELAHRPIRFIEKFCKPSKGSKRQLVLQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLSHSWIPKHKVEYSNEKIPYREWEEDGLLTVQDKPYIDYQDVLNWIIKMNEHYVVEKITYDRANAFKLNQELKNYGFETEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKIDGFAAFLNTYTDIMNKVVSDSGEGNIEFISIKDIMR
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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