From AureoWiki
Jump to navigation Jump to search
PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

Summary[edit | edit source]

  • pan ID?: SAUPAN002148000
  • symbol?: lpl7
  • synonym:
  • description?: tandem-type lipoprotein

      descriptions from strain specific annotations:

    • tandem-type lipoprotein
    • tandem lipoprotein
    • staphylococcus tandem lipoproteins family protein
    • Tandem lipoprotein within Pathogenicity island
  • strand?: +
  • coordinates?: 2655591..2657074
  • synteny block?: BlockID0014530
  • occurrence?: in 42% of 33 strains

Orthologs[edit | edit source]

    COL:
    N315:
    SA0405 (lpl9)
    NCTC8325:
    Newman:
    NWMN_0410 (lpl7nm)
    USA300_FPR3757:
    04-02981:
    SA2981_0421 (lpl9)
    08BA02176:
    11819-97:
    6850:
    71193:
    ECT-R 2:
    ECTR2_380
    ED133:
    ED98:
    SAAV_0388
    HO 5096 0412:
    JH1:
    SaurJH1_0480
    JH9:
    SaurJH9_0468
    JKD6008:
    JKD6159:
    LGA251:
    M013:
    MRSA252:
    MSHR1132:
    MSSA476:
    SAS0403
    Mu3:
    SAHV_0443 (lpl9)
    Mu50:
    SAV0445 (lpl9)
    MW2:
    MW0401 (lpl14)
    RF122:
    ST398:
    T0131:
    TCH60:
    TW20:
    USA300_TCH1516:
    USA300HOU_0445
    VC40:

Genome Viewer[edit | edit source]

COL
N315
Newman
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    COL             MMGYIKRMALYMSVFLLIIFIVGCRNMKDEQKKEEQTNKTDSKEEQIKKSFEKTLDMYPI
    N315            MMEYIKKIALYMSVLLLIIFIGGCGNMKEEQKKEANTNKTDSKEEKIKKSFAKTLDMYPI
    Newman          MMGYIKRMALYMSVFLLIIFIVGCRNMKDEQKKEEQTNKTDSKEEQIKKSFEKTLDMYPI
    USA300_FPR3757  MMGYIKRMALYMSVFLLIIFIVGCRNMKDEQKKEEQTNKTDSKEEQIKKSFEKTLDMYPI
                    ** ***::******:****** ** ***:***** :*********:***** ********

    COL             KNLEELYDKEGYRDGEFKKGDKGMWTIYTDFAKSNKQGGLSNEGMVLYLDRNTRTAKGHY
    N315            KNLEELYDKEGYRDGEFEKGDKGMWTIYTDFAKSNKPGELSNEGMVLYLDRNTRTAKGYY
    Newman          KNLEELYDKEGYRDGEFKKGDKGMWTIYTDFAKSNKQGGLSNEGMVLYLDRNTRTAKGHY
    USA300_FPR3757  KNLEELYDKEGYRDGEFKKGDKGMWTIYTDFAKSNKQGGLSNEGMVLYLDRNTRTAKGHY
                    *****************:****************** * *******************:*

    COL             FVKTFYNKGKFPDRKNYKVEMKNNKIILLDKVEDTNLKKRIENFKFFGQYANLKELKNYN
    N315            FVRTFYRKDKLPDRKNYKVEMKNNKIILLDKVEDPNLKKRIENFKFFGQYANLKELKNYS
    Newman          FVKTFYNKGKFPDRKNYKVEMKNNKIILLDKVEDTNLKKRIENFKFFGQYANLKELKNYN
    USA300_FPR3757  FVKTFYNKGKFPDRKNYKVEMKNNKIILLDKVEDTNLKKRIENFKFFGQYANLKELKNYN
                    **:***.*.*:***********************.************************.

    COL             NGDVSINENVPSYDAKFKMSNKDENVKQLRSRYNIPTDKAPVLKMHIDGNLKGSSVGYKK
    N315            NGDVSINENVPSYDVKYKMSNKDENVKQLRSRYNIPTDKSPVLKMHIDGNLKGSSVGDRK
    Newman          NGDVSINENVPSYDAKFKMSNKDENVKQLRSRYNIPTDKAPVLKMHIDGNLKGSSVGYKK
    USA300_FPR3757  NGDVSINENVPSYDAKFKMSNKDENVKQLRSRYNIPTDKAPVLKMHIDGNLKGSSVGYKK
                    **************.*:**********************:***************** :*

    COL             LEIDFSKGGKSDLSVIDSLNFQPAKVDEDDE
    N315            LEIDFSKRENSHLSVIDSLDYQPAKVDEDER
    Newman          LEIDFSKGGKSDLSVIDSLNFQPAKVDEDDE
    USA300_FPR3757  LEIDFSKGGKSDLSVIDSLNFQPAKVDEDDE
                    *******  :*.*******::********:.