PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002148000
• symbol^?: lpl7
• synonym:
• description^?: tandem-type lipoprotein

  descriptions from strain specific annotations:

  • tandem-type lipoprotein
  • tandem lipoprotein
  • staphylococcus tandem lipoproteins family protein
  • Tandem lipoprotein within Pathogenicity island
• strand^?: +
• coordinates^?: 2655591..2657074
• synteny block^?: BlockID0014530
• occurrence^?: in 42% of 33 strains

⊟Orthologs

COL:
SACOL0484
N315:
SA0405 (lpl9)
NCTC8325:
—
Newman:
NWMN_0410 (lpl7nm)
USA300_FPR3757:
SAUSA300_0417
04-02981:
SA2981_0421 (lpl9)
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
ECTR2_380
ED133:
—
ED98:
SAAV_0388
HO 5096 0412:
—
JH1:
SaurJH1_0480
JH9:
SaurJH9_0468
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS0403
Mu3:
SAHV_0443 (lpl9)
Mu50:
SAV0445 (lpl9)
MW2:
MW0401 (lpl14)
RF122:
—
ST398:
—
T0131:
—
TCH60:
—
TW20:
—
USA300_TCH1516:
USA300HOU_0445
VC40:
—

⊟Genome Viewer

COL
N315
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MMGYIKRMALYMSVFLLIIFIVGCRNMKDEQKKEEQTNKTDSKEEQIKKSFEKTLDMYPI
  N315            MMEYIKKIALYMSVLLLIIFIGGCGNMKEEQKKEANTNKTDSKEEKIKKSFAKTLDMYPI
  Newman          MMGYIKRMALYMSVFLLIIFIVGCRNMKDEQKKEEQTNKTDSKEEQIKKSFEKTLDMYPI
  USA300_FPR3757  MMGYIKRMALYMSVFLLIIFIVGCRNMKDEQKKEEQTNKTDSKEEQIKKSFEKTLDMYPI
                  ** ***::******:****** ** ***:***** :*********:***** ********
  
  COL             KNLEELYDKEGYRDGEFKKGDKGMWTIYTDFAKSNKQGGLSNEGMVLYLDRNTRTAKGHY
  N315            KNLEELYDKEGYRDGEFEKGDKGMWTIYTDFAKSNKPGELSNEGMVLYLDRNTRTAKGYY
  Newman          KNLEELYDKEGYRDGEFKKGDKGMWTIYTDFAKSNKQGGLSNEGMVLYLDRNTRTAKGHY
  USA300_FPR3757  KNLEELYDKEGYRDGEFKKGDKGMWTIYTDFAKSNKQGGLSNEGMVLYLDRNTRTAKGHY
                  *****************:****************** * *******************:*
  
  COL             FVKTFYNKGKFPDRKNYKVEMKNNKIILLDKVEDTNLKKRIENFKFFGQYANLKELKNYN
  N315            FVRTFYRKDKLPDRKNYKVEMKNNKIILLDKVEDPNLKKRIENFKFFGQYANLKELKNYS
  Newman          FVKTFYNKGKFPDRKNYKVEMKNNKIILLDKVEDTNLKKRIENFKFFGQYANLKELKNYN
  USA300_FPR3757  FVKTFYNKGKFPDRKNYKVEMKNNKIILLDKVEDTNLKKRIENFKFFGQYANLKELKNYN
                  **:***.*.*:***********************.************************.
  
  COL             NGDVSINENVPSYDAKFKMSNKDENVKQLRSRYNIPTDKAPVLKMHIDGNLKGSSVGYKK
  N315            NGDVSINENVPSYDVKYKMSNKDENVKQLRSRYNIPTDKSPVLKMHIDGNLKGSSVGDRK
  Newman          NGDVSINENVPSYDAKFKMSNKDENVKQLRSRYNIPTDKAPVLKMHIDGNLKGSSVGYKK
  USA300_FPR3757  NGDVSINENVPSYDAKFKMSNKDENVKQLRSRYNIPTDKAPVLKMHIDGNLKGSSVGYKK
                  **************.*:**********************:***************** :*
  
  COL             LEIDFSKGGKSDLSVIDSLNFQPAKVDEDDE
  N315            LEIDFSKRENSHLSVIDSLDYQPAKVDEDER
  Newman          LEIDFSKGGKSDLSVIDSLNFQPAKVDEDDE
  USA300_FPR3757  LEIDFSKGGKSDLSVIDSLNFQPAKVDEDDE
                  *******  :*.*******::********:.