PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002835000
• symbol^?: —
• synonym:
• description^?: topiosmerase

  descriptions from strain specific annotations:

  • topiosmerase
  • TOPRIM domain-containing protein
  • putative Toprim domain protein
  • TOPRIM domain protein
  • DNA primase/ small primase-like protein
  • pseudogene
  • putative small primase-like protein (Toprim domain)
  • topoisomerase/primase-like protein
  • TOPRIM domain-containing topiosmerase/primase
  • TOPRIM domain topiosmerase/primase protein
• strand^?: +
• coordinates^?: 3288799..3289194
• synteny block^?: BlockID0020190
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0880
N315:
SA0768
NCTC8325:
SAOUHSC_00840
Newman:
NWMN_0778
USA300_FPR3757:
SAUSA300_0794
04-02981:
SA2981_0790
08BA02176:
C248_0904
11819-97:
MS7_0862
6850:
RSAU_000785
71193:
ST398NM01_0890
ECT-R 2:
ECTR2_762
ED133:
SAOV_0852
ED98:
SAAV_0781
HO 5096 0412:
SAEMRSA15_07370
JH1:
SaurJH1_0852
JH9:
SaurJH9_0836
JKD6008:
SAA6008_00833
JKD6159:
SAA6159_00766
LGA251:
SARLGA251_07410
M013:
M013TW_0801
MRSA252:
SAR0867
MSHR1132:
SAMSHR1132_07590
MSSA476:
SAS0776
Mu3:
SAHV_0831
Mu50:
SAV0835
MW2:
MW0788
RF122:
SAB0766
ST398:
SAPIG0890
T0131:
SAT0131_00910
TCH60:
HMPREF0772_12368
TW20:
SATW20_08840
USA300_TCH1516:
USA300HOU_0845
VC40:
SAVC_03710

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             ---MAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLA
  N315            ---MAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLA
  NCTC8325        ---MAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLA
  Newman          MMMMAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLA
  USA300_FPR3757  ---MAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLA
                     *********************************************************
  
  COL             DSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPN
  N315            DSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPN
  NCTC8325        DSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPN
  Newman          DSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPN
  USA300_FPR3757  DSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPN
                  ************************************************************
  
  COL             INNERLVLVNE
  N315            INNERLVLVNE
  NCTC8325        INNERLVLVNE
  Newman          INNERLVLVNE
  USA300_FPR3757  INNERLVLVNE
                  ***********