Pangenome04-0298108BA0217611819-97685071193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

⊟Summary[edit | edit source]

pan ID^?: SAUPAN002847000
symbol^?: —
description^?: Cro/CI family transcriptional regulator
- Cro/CI family transcriptional regulator
- transcriptional regulator
- Bacteriophage repressor
- CI-like repressor, superantigen-encodingpathogenicity islands SaPI
strand^?: -
coordinates^?: 3297457..3297789
synteny block^?: BlockID0020280
occurrence^?: in 15% of 33 strains

⊟Orthologs[edit | edit source]

COL:

SACOL0890

N315:

—

NCTC8325:

—

Newman:

—

USA300_FPR3757:

SAUSA300_0803

04-02981:

—

08BA02176:

—

11819-97:

—

6850:

—

71193:

—

ECT-R 2:

—

ED133:

—

ED98:

—

HO 5096 0412:

—

JH1:

—

JH9:

—

JKD6008:

—

JKD6159:

—

LGA251:

—

M013:

M013TW_0811

MRSA252:

—

MSHR1132:

—

MSSA476:

—

Mu3:

—

Mu50:

—

MW2:

—

RF122:

—

ST398:

—

T0131:

SAT0131_00920 (lytM)

TCH60:

—

TW20:

—

USA300_TCH1516:

USA300HOU_0854

VC40:

—

⊟Genome Viewer[edit | edit source]

⊟Alignments[edit | edit source]

alignment of orthologues:
CLUSTAL format alignment by MAFFT L-INS-i (v7.307)

COL             MRTNDEIITIIKTSMKEQNMSLSELARRVGVAKSAVSRYLNLTREFPLNRAEDFAKVLGI
USA300_FPR3757  MRTNDEIITIIKTSMKEQNMSLSELARRVGVAKSAVSRYLNLTREFPLNRAEDFAKVLGI
                ************************************************************

COL             KTEYLLGFAEREESTKQDTIAAHLDGDFTEEELIEIRKYAELVRKAHRNQ
USA300_FPR3757  KTEYLLGFAEREESTKQDTIAAHLDGDFTEEELIEIRKYAELVRKAHRNQ
                **************************************************

Contents

⊟Summary[edit | edit source]

⊟Orthologs[edit | edit source]

⊟Genome Viewer[edit | edit source]

⊟Alignments[edit | edit source]

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COL chromosome
USA300_FPR3757 chromosome