PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003688000
• symbol^?: —
• synonym:
• description^?: multidrug ABC transporter permease

  descriptions from strain specific annotations:

  • multidrug ABC transporter permease
  • ABC transporter permease
  • ABC superfamily ATP binding cassette transporter, membrane protein
  • ABC transporter
  • ABC transporter ATP-binding protein
  • ABC transporter permease protein
• strand^?: +
• coordinates^?: 3994104..3995844
• synteny block^?: BlockID0027540
• occurrence^?: in 73% of 33 strains

⊟Orthologs

COL:
SACOL1353
N315:
SA1157
NCTC8325:
SAOUHSC_01312
Newman:
NWMN_1232
USA300_FPR3757:
SAUSA300_1218
04-02981:
SA2981_1275
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
ECTR2_1179
ED133:
—
ED98:
SAAV_1299
HO 5096 0412:
SAEMRSA15_11670
JH1:
SaurJH1_1408
JH9:
SaurJH9_1381
JKD6008:
SAA6008_01284
JKD6159:
SAA6159_01187
LGA251:
—
M013:
—
MRSA252:
SAR1330
MSHR1132:
SAMSHR1132_11650
MSSA476:
SAS1260
Mu3:
SAHV_1309
Mu50:
SAV1320
MW2:
MW1207
RF122:
—
ST398:
—
T0131:
SAT0131_01387
TCH60:
HMPREF0772_11888
TW20:
SATW20_13220
USA300_TCH1516:
USA300HOU_1264
VC40:
SAVC_05840

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MILSYLKIEFKVIMRKKTTLILSILFPVIFYILFTSILELPEDVKPKFYKEYMYSMTVYS
  N315            MILSYLKIEFKVIMRKKTTLILSILFPVIFYILFTSILELPEDVKPKFYKEYMYSMTVYS
  NCTC8325        MILSYLKIEFKVIMRKKTTLILSILFPVIFYILFTSILELPEDVKPKFYKEYMYSMTVYS
  Newman          MILSYLKIEFKVIMRKKTTLILSILFPVIFYILFTSILELPEDVKPKFYKEYMYSMTVYS
  USA300_FPR3757  MILSYLKIEFKVIMRKKTTLILSILFPVIFYILFTSILELPEDVKPKFYKEYMYSMTVYS
                  ************************************************************
  
  COL             LLSFSLLTFPLDIINEKQNEWRQRLMVTPFTFTSYYISKVVKTMLQFAIAILVIFMVGHF
  N315            LLSFSLLTFPLDIINEKQNEWRQRLMVTPFTFTSYYISKVVKTMLQFAIAILVIFMVGHF
  NCTC8325        LLSFSLLTFPLDIINEKQNEWRQRLMVTPFTFTSYYISKVVKTMLQFAIAILVIFMVGHF
  Newman          LLSFSLLTFPLDIINEKQNEWRQRLMVTPFTFTSYYISKVVKTMLQFAIAILVIFMVGHF
  USA300_FPR3757  LLSFSLLTFPLDIINEKQNEWRQRLMVTPFTFTSYYISKVVKTMLQFAIAILVIFMVGHF
                  ************************************************************
  
  COL             YKGVAMSAVQWLESGIFLWLGASLLITFGILFSLLNDIQKTSALANIVTIGLAVLGGLWF
  N315            YKGVAMSAVQWLESGIFLWLGASLLITFGILFSLLNDIQKTSALANIVTIGLAVLGGLWF
  NCTC8325        YKGVAMSAVQWLESGIFLWLGASLLITFGILFSLLNDIQKTSALANIVTIGLAVLGGLWF
  Newman          YKGVAMSAVQWLESGIFLWLGASLLITFGILFSLLNDIQKTSALANIVTIGLAVLGGLWF
  USA300_FPR3757  YKGVAMSAVQWLESGIFLWLGASLLITFGILFSLLNDIQKTSALANIVTIGLAVLGGLWF
                  ************************************************************
  
  COL             PINTFPNWLQHVAHVLPSYHLRKLGVDIASNHHINLISFAIILLYALGSIIAVYCISHFK
  N315            PINTFPNWLQHVAHVLPSYHLRKLGVDIASNHHINLISFAIILLYVLGSIIAVYCISHFK
  NCTC8325        PINTFPNWLQHVAHVLPSYHLRKLGVDIASNHHINLISFAIILLYALGSIIAVYCISHFK
  Newman          PINTFPNWLQHVAHVLPSYHLRKLGVDIASNHHINLISFAIILLYALGSIIAVYCISHFK
  USA300_FPR3757  PINTFPNWLQHVAHVLPSYHLRKLGVDIASNHHINLISFAIILLYALGSIIAVYCISHFK
                  *********************************************.**************
  
  COL             RAE
  N315            RAE
  NCTC8325        RAE
  Newman          RAE
  USA300_FPR3757  RAE
                  ***